TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149080.4 + phase: 0 
         (79 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17077 similar to UP|Q43798 (Q43798) Inorganic pyrophosphatase ...    27  0.52
TC15244 similar to UP|O49235 (O49235) 2,4-D inducible glutathion...    26  1.5
CB826842                                                               25  3.4
TC19123                                                                25  3.4
BP059599                                                               24  5.8
TC15585 similar to UP|Q9MAX8 (Q9MAX8) Epsilon1-COP, partial (59%)      24  5.8
AV420631                                                               23  7.6
CN825699                                                               23  9.9

>TC17077 similar to UP|Q43798 (Q43798) Inorganic pyrophosphatase  , partial
           (22%)
          Length = 588

 Score = 27.3 bits (59), Expect = 0.52
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +3

Query: 22  LSMKITTYVNARTTL 36
           L MKI TY NARTTL
Sbjct: 543 LGMKIATYANARTTL 587


>TC15244 similar to UP|O49235 (O49235) 2,4-D inducible glutathione
           S-transferase  , complete
          Length = 1309

 Score = 25.8 bits (55), Expect = 1.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 7   CCLLIITLKQTSDIKLSMKITTYVNARTTLEARKGKRK 44
           CCLLI+T +   D  L M I  Y+    T   RK K++
Sbjct: 295 CCLLILTRELKLDSGLIMLIRRYMKLVGT*FGRKMKKE 408


>CB826842 
          Length = 637

 Score = 24.6 bits (52), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +1

Query: 14  LKQTSD-----IKLSMKITTYVNARTTLEARKGKRKSSAVA 49
           LKQ+S+     + +SMK T ++++   L  +KGK  S+  A
Sbjct: 214 LKQSSEENLLSLDISMKSTEHLDSEENLAPQKGKLVSATTA 336


>TC19123 
          Length = 783

 Score = 24.6 bits (52), Expect = 3.4
 Identities = 11/30 (36%), Positives = 19/30 (62%)
 Frame = -2

Query: 7   CCLLIITLKQTSDIKLSMKITTYVNARTTL 36
           C LL+IT     D+K  ++ ++YVN+  T+
Sbjct: 470 CALLLITF----DVKRILRTSSYVNSMATI 393


>BP059599 
          Length = 367

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 12  ITLKQTSDIKLSMKITTYVNARTTLEARKGKRK 44
           IT KQT  I   +    + + R   E RKGKRK
Sbjct: 233 ITKKQTQQIWCVV*TRIFRHQRRDREKRKGKRK 331


>TC15585 similar to UP|Q9MAX8 (Q9MAX8) Epsilon1-COP, partial (59%)
          Length = 635

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 7   CCLLIITLKQTSDIKLSMKITTY 29
           CC+++  L   SD+ + MKI T+
Sbjct: 607 CCMILSCLSA*SDLCILMKICTF 539


>AV420631 
          Length = 355

 Score = 23.5 bits (49), Expect = 7.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 45  SSAVAFRSGAVKGFLLAANGLLLLS 69
           SSA+AF S +   FLL + G++L S
Sbjct: 290 SSALAFSSVSA*AFLLPSTGIVLKS 216


>CN825699 
          Length = 719

 Score = 23.1 bits (48), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 3   RVSGCCLLIITLKQTSDIKLSMK 25
           R+ G CLLII+ K    ++ S K
Sbjct: 442 RIMGVCLLIISRKGKEKLRTSYK 510


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,367,473
Number of Sequences: 28460
Number of extensions: 11724
Number of successful extensions: 92
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of query: 79
length of database: 4,897,600
effective HSP length: 55
effective length of query: 24
effective length of database: 3,332,300
effective search space: 79975200
effective search space used: 79975200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)