BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149079.6 - phase: 0
(483 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP040968 89 2e-18
TC12371 43 1e-04
CB827210 41 5e-04
TC9131 weakly similar to UP|O80986 (O80986) At2g26110 protein, p... 40 8e-04
AW164126 40 0.001
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 39 0.001
TC10635 similar to UP|Q946U8 (Q946U8) Long cell-linked locus pro... 39 0.002
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 38 0.003
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 37 0.007
TC13884 similar to UP|Q8VYJ9 (Q8VYJ9) At1g72790/F28P22_2, partia... 37 0.007
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos... 37 0.007
AV764841 37 0.009
AV408295 36 0.012
TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.3... 35 0.027
TC16676 similar to UP|P93028 (P93028) Ubiquitin activating enzym... 35 0.027
BP043764 35 0.036
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 35 0.036
TC19908 similar to GB|CAA60022.1|791150|VURNEXT26 extensin-like ... 34 0.061
BI420337 34 0.061
AW428678 34 0.061
>BP040968
Length = 483
Score = 88.6 bits (218), Expect = 2e-18
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Frame = -1
Query: 387 EQTDKERFIEKRVI-LEAEETDSDEDEDV-GELKQSVKSVKTEEPCSSSLSGGIDTVSDE 444
E+ E F+ K + + E+ +S+E+E+V GE + ++ EE + + V DE
Sbjct: 480 EEGIHESFLGKLIEEYDDEDPESEEEEEVNGEGRLIIQKESGEESSQAEGASFGTIVGDE 301
Query: 445 GPDVDKKADEFIAKFREQIRLQRIESIKRSTRVARNSSR 483
GPDVDKKADEFIA+FRE IRLQRIESIKRSTRVARNSSR
Sbjct: 300 GPDVDKKADEFIAQFREPIRLQRIESIKRSTRVARNSSR 184
>TC12371
Length = 392
Score = 42.7 bits (99), Expect = 1e-04
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +2
Query: 409 DEDEDVGELKQSVKSVKTEEPCSSSLSGGIDTVSDEGPDVDKKADEFIAKFREQIRLQRI 468
D DED GE+ + V G+D+ +VD+KA EFIAKF+ QIR Q++
Sbjct: 50 DSDEDDGEVSEYVND------------SGLDS------EVDRKASEFIAKFKAQIRFQKV 175
Query: 469 ESIKRS 474
SI+ S
Sbjct: 176 GSIESS 193
>CB827210
Length = 422
Score = 40.8 bits (94), Expect = 5e-04
Identities = 21/64 (32%), Positives = 40/64 (61%)
Frame = +3
Query: 418 KQSVKSVKTEEPCSSSLSGGIDTVSDEGPDVDKKADEFIAKFREQIRLQRIESIKRSTRV 477
K+ +V+ P ++++ G T E +VD +AD+FI +F++Q++LQR++SI R +
Sbjct: 3 KEEEVAVERRRP-ATAIGKGETTSWGEDEEVDARADDFINRFKKQLKLQRMDSILRYREM 179
Query: 478 ARNS 481
R +
Sbjct: 180 LRGN 191
>TC9131 weakly similar to UP|O80986 (O80986) At2g26110 protein, partial
(21%)
Length = 781
Score = 40.0 bits (92), Expect = 8e-04
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +1
Query: 440 TVSDEGPDVDKKADEFIAKFREQIRLQRIESIKR 473
+ +D+ VD KAD+FI KF++Q++LQR++SI R
Sbjct: 241 SAADDDDGVDAKADDFINKFKQQLQLQRLDSIIR 342
>AW164126
Length = 387
Score = 39.7 bits (91), Expect = 0.001
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 320 KSFYYKSYPPPPPPPPPTMFYKS 342
K +YYKS PPP P PPP +YKS
Sbjct: 167 KPYYYKSPPPPSPSPPPPYYYKS 235
Score = 37.0 bits (84), Expect = 0.007
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 9/63 (14%)
Frame = +2
Query: 289 NASKPSMVKTSSIKFTPSESVAKNSEDLIKK---------KSFYYKSYPPPPPPPPPTMF 339
N+++ ++ T+ + PS S++ L+ + K +YYKS PPPP P P +
Sbjct: 2 NSARVTISSTTLLLQIPSSSISSTPSTLLLQVPTPTFTISKPYYYKS-PPPPSPSPKPYY 178
Query: 340 YKS 342
YKS
Sbjct: 179 YKS 187
Score = 34.3 bits (77), Expect = 0.046
Identities = 13/21 (61%), Positives = 15/21 (70%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P P P +YKS
Sbjct: 221 YYYKSPPPPSPVPHPPYYYKS 283
Score = 32.0 bits (71), Expect = 0.23
Identities = 14/22 (63%), Positives = 15/22 (67%), Gaps = 2/22 (9%)
Frame = +2
Query: 323 YYKSYPPPP--PPPPPTMFYKS 342
YY S PPPP PPPPT +Y S
Sbjct: 317 YYYSSPPPPVKSPPPPTPYYYS 382
Score = 32.0 bits (71), Expect = 0.23
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P P P +Y S
Sbjct: 269 YYYKSPPPPSPIPHPPYYYSS 331
Score = 28.5 bits (62), Expect = 2.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 12/34 (35%)
Frame = +3
Query: 322 FYYKSYPPP------------PPPPPPTMFYKST 343
+YYKS PPP PPPP P++ + +T
Sbjct: 36 YYYKSPPPPSPVPHPPYYYKSPPPPSPSLNHTTT 137
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 39.3 bits (90), Expect = 0.001
Identities = 31/111 (27%), Positives = 49/111 (43%), Gaps = 13/111 (11%)
Frame = +3
Query: 359 MGKSIEEGTNEKEDEDEEE----------KEYSTSSMQEQTDKERFIEKRVILEAEETDS 408
+ + +EE ++EDE+E+ + +E+ +E E+ V++E E+ +
Sbjct: 324 LNQGVEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNE 503
Query: 409 DEDEDVGELKQSVKSVKTEEPCSSSLSGGIDTVSDEG---PDVDKKADEFI 456
DEDED E V VK + S L G T S P DK+ E I
Sbjct: 504 DEDEDEEEEGVVVVEVKGRKVDSKGLHSGSGTPSKVAYVIPLPDKRTLELI 656
Score = 26.9 bits (58), Expect = 7.4
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 233 VEDKLKQKEEENAVLPSPIPWRSRSASARMMEPKQEAIEKALKASMVMEPKQEANEN 289
VE++ + +E+E P P RSR A+ + ++E E+ + V+ ++ NE+
Sbjct: 336 VEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNED 506
>TC10635 similar to UP|Q946U8 (Q946U8) Long cell-linked locus protein,
partial (16%)
Length = 1243
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 378 KEYSTSSMQEQTDKERFIEKRVILEAE-ETDSDEDEDVGELKQSVKSVKTEEPCSSSLSG 436
K Y SSM+ I V + + E D+D + ++S+ V E+
Sbjct: 639 KMYRPSSMRFNLPHIPCINPHVDFDYDFEDDNDNIVEYDNGRKSIVLVNAEDHGQDIAFS 818
Query: 437 GIDTVSDEGPDVDKKADEFIAKFREQIRLQRIESIKRST 475
D DE +DK+ADEFIA+F +Q++LQR S+ + T
Sbjct: 819 EEDQEEDE-QGIDKQADEFIARFYQQMKLQRQISLLQYT 932
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 38.1 bits (87), Expect = 0.003
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P PPP +YKS
Sbjct: 178 YYYKSPPPPSPSPPPPYYYKS 240
Score = 38.1 bits (87), Expect = 0.003
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P PPP +YKS
Sbjct: 226 YYYKSPPPPSPSPPPPYYYKS 288
Score = 36.6 bits (83), Expect = 0.009
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P PPP +Y+S
Sbjct: 82 YYYKSPPPPSPSPPPPYYYQS 144
Score = 33.9 bits (76), Expect = 0.061
Identities = 13/21 (61%), Positives = 15/21 (70%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P P P +YKS
Sbjct: 274 YYYKSPPPPSPIPHPPYYYKS 336
Score = 33.1 bits (74), Expect = 0.10
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YY+S PPP PPP +YKS
Sbjct: 130 YYYQSPPPPSHSPPPPYYYKS 192
Score = 32.3 bits (72), Expect = 0.18
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
++YKS PPPPPP P +YKS
Sbjct: 7 YWYKS-PPPPPPVPKPYYYKS 66
Score = 32.0 bits (71), Expect = 0.23
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
++Y S PPP P P PT YKS
Sbjct: 514 YHYTSPPPPSPSPAPTYIYKS 576
Score = 32.0 bits (71), Expect = 0.23
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
++Y S PPP P P PT YKS
Sbjct: 418 YHYASPPPPSPSPAPTYIYKS 480
Score = 30.8 bits (68), Expect = 0.51
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP PPP Y S
Sbjct: 322 YYYKSPPPPTSSPPPPYHYVS 384
Score = 29.6 bits (65), Expect = 1.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
++Y S PPP P PPP Y S
Sbjct: 370 YHYVSPPPPSPSPPPPYHYAS 432
Score = 27.7 bits (60), Expect = 4.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 321 SFYYKSYPPPP-PPPPPTMFYKS 342
++ YKS PPP PPPP Y S
Sbjct: 559 TYIYKSPPPPTKSPPPPVYIYAS 627
Score = 27.3 bits (59), Expect = 5.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 321 SFYYKSYPPPPPPPPPTMFYKS 342
++ YKS PPP PPP Y S
Sbjct: 463 TYIYKSPPPPVKLPPPPYHYTS 528
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 37.0 bits (84), Expect = 0.007
Identities = 41/159 (25%), Positives = 73/159 (45%)
Frame = +1
Query: 299 SSIKFTPSESVAKNSEDLIKKKSFYYKSYPPPPPPPPPTMFYKSTFLKSRYGEKNGRNMS 358
+S++ +P+E++ +E + KK+ KS P F L++ E
Sbjct: 58 ASLQESPNEAMV--NESITKKRKLVPKSSQSAELP-----FKLQNKLEAEVQEYE----E 204
Query: 359 MGKSIEEGTNEKEDEDEEEKEYSTSSMQEQTDKERFIEKRVILEAEETDSDEDEDVGELK 418
+ + +EE E+E+E+EEE+E E+ ++E E+ V EAEE D DE + +L
Sbjct: 205 VEEEVEEEVEEEEEEEEEEEE------GEEEEEEEEEEEEVEAEAEEED---DEPIQKLL 357
Query: 419 QSVKSVKTEEPCSSSLSGGIDTVSDEGPDVDKKADEFIA 457
+ + +E S L+ D + K ADE ++
Sbjct: 358 EPM----GKEQIISLLADAASNHRDVADRIRKVADEDVS 462
>TC13884 similar to UP|Q8VYJ9 (Q8VYJ9) At1g72790/F28P22_2, partial (9%)
Length = 551
Score = 37.0 bits (84), Expect = 0.007
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Frame = +3
Query: 421 VKSVKTEEPCSSSLSGGIDTVSDE---------GPDVDKKADEFIAKFREQIRLQRIESI 471
+ S+K+ P S G+D+ + E PDVD +AD FI +FR +R++++ S
Sbjct: 78 IDSIKSSFPDSDE---GVDSATGEDGEIQLFYASPDVDSQADNFIERFRAGLRIEKMNST 248
Query: 472 KRSTRVARNS 481
K + +++
Sbjct: 249 KEKQGLGKSN 278
Score = 35.0 bits (79), Expect = 0.027
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +3
Query: 328 PPPPPPPPPTMFYKSTFLKSRYGEKNGRNMSMGKSI---EEGTNEKEDEDEE-EKEYSTS 383
PPPPPPPPP +K K R R S+ S +EG + ED E + Y++
Sbjct: 3 PPPPPPPPP---FKMPVWKFRVQGDFVRIDSIKSSFPDSDEGVDSATGEDGEIQLFYASP 173
Query: 384 SMQEQTDKERFIEK-RVILEAEETDSDEDE 412
+ Q D FIE+ R L E+ +S +++
Sbjct: 174 DVDSQAD--NFIERFRAGLRIEKMNSTKEK 257
>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
clone: MSJ11, partial (39%)
Length = 1403
Score = 37.0 bits (84), Expect = 0.007
Identities = 62/263 (23%), Positives = 101/263 (37%), Gaps = 7/263 (2%)
Frame = +3
Query: 208 SKTTTKRFSSNSFNRVRNYAEFEGLVEDKLKQKEEENAVLPSPIPWRSRSASARMMEPKQ 267
+KT K SS A EG VE+ + + LP+P W+ + + PK+
Sbjct: 30 NKTKVKMASSVEKEVGGGAAAAEGGVEETVSLE------LPAPSGWQKKFFPKKSGTPKK 191
Query: 268 -EAIEKALKASMVMEPKQEANENASKPSMVKTSSIKFTPSESVAKNSEDLIKKKSFYYKS 326
E + A + KQ + P S + E+ +++ I +K K
Sbjct: 192 NEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFDWGTGETPRRSAR--ISEK---VKV 356
Query: 327 YPPPPPPPPPTMFYKSTFLKSRYGEKNGRNMSMGKSIEEGTNEKEDEDEEEKEYSTSSMQ 386
P P PP +K G+ S K G EKE+ + E MQ
Sbjct: 357 TPTPESDPP---------------KKRGKRSSASKKDASGEEEKEETKDVE-------MQ 470
Query: 387 EQTD-KERFIEKRVILEAEETDSDEDEDVGELKQSVKSVKTEEPC--SSSLSGGIDTVSD 443
E + K+ E + +AE+TD ++DE E + + K E G +T
Sbjct: 471 EAGETKDAVKENQDENKAEDTDVNQDEKKAEATDANQDEKRAEDADVKEPTHPGENT--- 641
Query: 444 EGPDVDKK---ADEFIAKFREQI 463
+GP+ + K ADE + +E++
Sbjct: 642 DGPNDEGKLNTADEELQASKEKV 710
>AV764841
Length = 510
Score = 36.6 bits (83), Expect = 0.009
Identities = 17/44 (38%), Positives = 24/44 (53%)
Frame = -2
Query: 64 LTRNWELLHLLFVGIAISYGLFSRRNQEPDKDNNNNTKFDNAQS 107
L W+ L++L V +AI YG+F+RRN + NN N S
Sbjct: 497 LKTRWDSLNILLVVLAILYGVFARRNDDEPSPQNNVVPDQNGAS 366
>AV408295
Length = 426
Score = 36.2 bits (82), Expect = 0.012
Identities = 35/134 (26%), Positives = 53/134 (39%)
Frame = +3
Query: 283 KQEANENASKPSMVKTSSIKFTPSESVAKNSEDLIKKKSFYYKSYPPPPPPPPPTMFYKS 342
K+E+N A P K + A N +L S PPPP P P+ K
Sbjct: 3 KEESNVVADLPEPQKKALDDLKQLIQDALNKHEL---------SAPPPPKAPSPSTEAKK 155
Query: 343 TFLKSRYGEKNGRNMSMGKSIEEGTNEKEDEDEEEKEYSTSSMQEQTDKERFIEKRVILE 402
+ + E+ K EE + E+E + +E + E+ K EK+ E
Sbjct: 156 DEVAAAATEE--------KVEEEEEKKTEEEKKPAEEEKKEEVVEEEKKPAEEEKKAEAE 311
Query: 403 AEETDSDEDEDVGE 416
E T S E+++V E
Sbjct: 312 GEATTSGEEKNVVE 353
>TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.33), partial
(12%)
Length = 565
Score = 35.0 bits (79), Expect = 0.027
Identities = 25/98 (25%), Positives = 39/98 (39%)
Frame = +2
Query: 265 PKQEAIEKALKASMVMEPKQEANENASKPSMVKTSSIKFTPSESVAKNSEDLIKKKSFYY 324
P A +AS + P + +ASK + +P+ S + ++ +
Sbjct: 239 PPASTTPSATRASSLGIPNPPTSSSASKTPSPCSPPTSSSPTGSSSHSTSNPPHPPPQQQ 418
Query: 325 KSYPPPPPPPPPTMFYKSTFLKSRYGEKNGRNMSMGKS 362
PPPPPPPPP+ S+ + GR S KS
Sbjct: 419 PFSPPPPPPPPPSPTAPSSHPRLPAAPAAGRISSASKS 532
>TC16676 similar to UP|P93028 (P93028) Ubiquitin activating enzyme
(Ubiquitin-activating enzyme E1) , partial (8%)
Length = 712
Score = 35.0 bits (79), Expect = 0.027
Identities = 21/76 (27%), Positives = 36/76 (46%)
Frame = +3
Query: 271 EKALKASMVMEPKQEANENASKPSMVKTSSIKFTPSESVAKNSEDLIKKKSFYYKSYPPP 330
+ +L S + P ++ + + + +I F SE V E+ + KK + PPP
Sbjct: 105 KSSLSFSFIFSPPKQDSIPSFLSQLPIAGTICFQASELV---KEEWL*KK----RGIPPP 263
Query: 331 PPPPPPTMFYKSTFLK 346
PPPPPP + + F +
Sbjct: 264 PPPPPPLLLLRRRFTR 311
>BP043764
Length = 479
Score = 34.7 bits (78), Expect = 0.036
Identities = 19/45 (42%), Positives = 23/45 (50%)
Frame = +3
Query: 292 KPSMVKTSSIKFTPSESVAKNSEDLIKKKSFYYKSYPPPPPPPPP 336
KP TS+ P ++ K+S L K K PPPPPPPPP
Sbjct: 216 KPKPAPTSN----PLKNPFKSSHALTNKLWLTSKLSPPPPPPPPP 338
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 34.7 bits (78), Expect = 0.036
Identities = 28/100 (28%), Positives = 37/100 (37%)
Frame = +2
Query: 248 PSPIPWRSRSASARMMEPKQEAIEKALKASMVMEPKQEANENASKPSMVKTSSIKFTPSE 307
PS P + AS+ PK + + S A +S + +SS P
Sbjct: 197 PSSSPASASPASSPTKSPKPSSPSASAPPSSTPLTPSTATSESSPTATSSSSSASPAPPT 376
Query: 308 SVAKNSEDLIKKKSFYYKSYPPPPPPPPPTMFYKSTFLKS 347
S + S L K S P PPP PP+ ST L S
Sbjct: 377 SFSALSRALELKALASSPSPPSSPPPSPPSAICMSTSLSS 496
>TC19908 similar to GB|CAA60022.1|791150|VURNEXT26 extensin-like protein
{Vigna unguiculata;} , partial (49%)
Length = 472
Score = 33.9 bits (76), Expect = 0.061
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+ YKS PPP P PPP YKS
Sbjct: 65 YVYKSPPPPSPSPPPPYIYKS 127
Score = 33.5 bits (75), Expect = 0.079
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+ YKS PPP P PPP YKS
Sbjct: 17 YVYKSPPPPSPSPPPPYVYKS 79
Score = 30.0 bits (66), Expect = 0.88
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+ YKS PPP PPP YKS
Sbjct: 113 YIYKSPPPPSHSPPPPYVYKS 175
>BI420337
Length = 397
Score = 33.9 bits (76), Expect = 0.061
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +1
Query: 304 TPSESVAKNSEDLIKKKSFYYKSYPPP-------PPPPPPTMFYKS 342
+P V K + ++YYKS PPP P PPPP YKS
Sbjct: 223 SPPPPVYKYKSPPPRTPAYYYKSPPPPPKNPYKYPSPPPPVYKYKS 360
Score = 30.0 bits (66), Expect = 0.88
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 320 KSFYYKSYPPPPPPPPPTMFYKS 342
K +YY S PPP PPP Y S
Sbjct: 118 KPYYYHSPPPPMHSPPPPYHYSS 186
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 8/28 (28%)
Frame = +1
Query: 323 YYKSYPPPPP--------PPPPTMFYKS 342
Y+ S PPPPP PPPP YKS
Sbjct: 172 YHYSSPPPPPKKPYKYPSPPPPVYKYKS 255
>AW428678
Length = 394
Score = 33.9 bits (76), Expect = 0.061
Identities = 13/21 (61%), Positives = 15/21 (70%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP P P P +YKS
Sbjct: 38 YYYKSPPPPSPIPHPPYYYKS 100
Score = 30.8 bits (68), Expect = 0.51
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 322 FYYKSYPPPPPPPPPTMFYKS 342
+YYKS PPP PPP Y S
Sbjct: 86 YYYKSPPPPTSSPPPPYHYVS 148
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.126 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,537,798
Number of Sequences: 28460
Number of extensions: 127417
Number of successful extensions: 5751
Number of sequences better than 10.0: 340
Number of HSP's better than 10.0 without gapping: 2103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3859
length of query: 483
length of database: 4,897,600
effective HSP length: 94
effective length of query: 389
effective length of database: 2,222,360
effective search space: 864498040
effective search space used: 864498040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149079.6