BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149079.10 - phase: 0
(257 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP036840 120 3e-28
TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like ... 113 3e-26
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 99 5e-22
TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive e... 94 3e-20
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 91 1e-19
TC11452 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (33%) 90 4e-19
TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding pro... 89 6e-19
TC13128 similar to AAS46630 (AAS46630) At5g21960, partial (40%) 89 7e-19
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 86 5e-18
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 83 4e-17
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 83 5e-17
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 82 9e-17
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 79 6e-16
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 78 2e-15
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 77 2e-15
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 75 8e-15
AI967551 75 8e-15
TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive elem... 75 8e-15
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 75 1e-14
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 73 6e-14
>BP036840
Length = 584
Score = 120 bits (300), Expect = 3e-28
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +3
Query: 71 NPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP 130
+P YRGVR R+WG+WVSEIREPRKKSRIWLG+FP P+MAA+A+DVAA +KG A LNFP
Sbjct: 78 HPVYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFP 257
Query: 131 ELAAVLPRAASASPKDIQVAAAKAAA 156
+ LP A+ + +DIQ AAAKAA+
Sbjct: 258 DEVDRLPVPATCTARDIQAAAAKAAS 335
>TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like protein,
partial (29%)
Length = 454
Score = 113 bits (283), Expect = 3e-26
Identities = 63/118 (53%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Frame = +3
Query: 16 QPTTSLSSY-IIASTSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGMVNKVNDRKNNP-- 72
+P+ S Y I+ T S + E E + T + N +R++N
Sbjct: 99 KPSYSNFKYPILFITMSVEPHNSETESNSNSNSYTSLSSSSPPQSNNNNTKRNRESNTHA 278
Query: 73 TYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP 130
YRGVRMR WGKWVSEIREPRKKSRIWLGTF TP+MAARAHDVAAL+IKGS+A LNFP
Sbjct: 279 VYRGVRMRTWGKWVSEIREPRKKSRIWLGTFCTPEMAARAHDVAALSIKGSAAILNFP 452
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 99.4 bits (246), Expect = 5e-22
Identities = 62/167 (37%), Positives = 87/167 (51%), Gaps = 23/167 (13%)
Frame = +3
Query: 29 TSSNSSSSLEEEE-----EEEEATNTKCKEKKKKKVGM--VNKVNDRKNNPTYRGVRMRQ 81
TS +SS L ++ +++ A K EKKK VG K N RKN YRG+R R
Sbjct: 252 TSKSSSPPLNFDDVIQVPDQKVAGCDKKGEKKKSVVGSGGAGKKNARKN--VYRGIRQRP 425
Query: 82 WGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELAAVLP---- 137
WGKW +EIR+P+K R+WLGTFPT + AARA+D AA I+G A LNFP+ A P
Sbjct: 426 WGKWAAEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKK 605
Query: 138 ------------RAASASPKDIQVAAAKAAATVYNHAITDQIELEAE 172
+ S+ P ++ ++A + + DQ L+ +
Sbjct: 606 QRCLSPEQPEYSSSGSSGPTTTTTGSSDSSAPIITTGLEDQPNLKLQ 746
>TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive element
binding protein, partial (37%)
Length = 382
Score = 93.6 bits (231), Expect = 3e-20
Identities = 44/92 (47%), Positives = 60/92 (64%)
Frame = +1
Query: 41 EEEEEATNTKCKEKKKKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWL 100
EEE + +T NK +++ P YRG+R R+WGKWV+E+REP K+SRIWL
Sbjct: 55 EEERDCCSTNSTITTTSNSSRENKRKHQQDKP-YRGIRQRKWGKWVAEVREPNKRSRIWL 231
Query: 101 GTFPTPDMAARAHDVAALTIKGSSAYLNFPEL 132
G++ +P AARA+D A ++G SA LNFPEL
Sbjct: 232 GSYASPVAAARAYDTAVFYLRGPSARLNFPEL 327
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 91.3 bits (225), Expect = 1e-19
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 23/162 (14%)
Frame = +3
Query: 62 VNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIK 121
V + +++ YRGVR R WGKW +EIR+P K +R+WLGTF T + AARA+D A+L +
Sbjct: 174 VREETEQQPKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEEAARAYDQASLRFR 353
Query: 122 GSSAYLNFPELAAVLPRA--------------------ASASPKDIQVAAAKAAATVYNH 161
G+ A LNFPE +L + A A Q ++ ++ Y++
Sbjct: 354 GNKAKLNFPENVRLLQQPSINQPTTHFSNSNSSEPIVHAEAQHHTFQGSSGSNSSNFYDY 533
Query: 162 ---AITDQIELEAEAEPSQAVSSSSSSSSSSSSSHNEGSSLK 200
++ DQ + + SSSSSSSS SS + SSL+
Sbjct: 534 SPMSLYDQANVSSTMASHHLQSSSSSSSSYSSMFASSVSSLQ 659
>TC11452 similar to UP|AAQ88400 (AAQ88400) CaCBF1B, partial (33%)
Length = 430
Score = 89.7 bits (221), Expect = 4e-19
Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 18/123 (14%)
Frame = +2
Query: 16 QPTTSLSSYIIAS-----------TSSNSSS-------SLEEEEEEEEATNTKCKEKKKK 57
Q TT+ S+Y +A+ TS N +S +L + +++ + KK
Sbjct: 68 QTTTTSSNY*LANPFVYTVPFSLITSKNETSFFLIDMFTLNQFPDQDNSEVFLAASNPKK 247
Query: 58 KVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAA 117
+ G K +P YRGVR R GKWV E+REP KK+RIWLGTFPTP+MAARAHDVAA
Sbjct: 248 RAG--RKKFRETRHPVYRGVRWRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAA 421
Query: 118 LTI 120
+ +
Sbjct: 422 IAL 430
>TC14961 similar to UP|Q9LEM7 (Q9LEM7) AP2-domain DNA-binding protein,
partial (27%)
Length = 1135
Score = 89.4 bits (220), Expect = 6e-19
Identities = 60/174 (34%), Positives = 86/174 (48%)
Frame = +1
Query: 50 KCKEKKKKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMA 109
K K KK M K + YRGVR R WGKWV+EIREP + R+WLGTF T A
Sbjct: 316 KVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFATAIGA 495
Query: 110 ARAHDVAALTIKGSSAYLNFPELAAVLPRAASASPKDIQVAAAKAAATVYNHAITDQIEL 169
A A+D AA + GSSA LNFP +A + + S KD V
Sbjct: 496 ALAYDEAARAMYGSSARLNFPNVA--VSHFSEESLKDSSV-------------------- 609
Query: 170 EAEAEPSQAVSSSSSSSSSSSSSHNEGSSLKGEDDMFLNLPDLTLDLRHSGDDG 223
A + ++++ +++ S SS+N G + E+D+ + L+L ++H +G
Sbjct: 610 -ANDDSGSSMAAVLANTESKVSSNNSG--VGTEEDVDMEPISLSLSVKHMNGEG 762
>TC13128 similar to AAS46630 (AAS46630) At5g21960, partial (40%)
Length = 512
Score = 89.0 bits (219), Expect = 7e-19
Identities = 52/129 (40%), Positives = 66/129 (50%)
Frame = +2
Query: 55 KKKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHD 114
K K MV ++ YRGVR R+WGK+VSEIR P + RIWLG++ + + AARA D
Sbjct: 119 KMVKQSMVKVEEKHDSSSIYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFD 298
Query: 115 VAALTIKGSSAYLNFPELAAVLPRAASASPKDIQVAAAKAAATVYNHAITDQIELEAEAE 174
A ++G S NFP+ + S +P IQ AAA A T D E
Sbjct: 299 AAMFCLRGRSGRFNFPDNPPDIAGGRSMTPPQIQAAAAHFANTESGQDSRDTHPGRPEPA 478
Query: 175 PSQAVSSSS 183
S VSSSS
Sbjct: 479 ESXVVSSSS 505
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 86.3 bits (212), Expect = 5e-18
Identities = 50/144 (34%), Positives = 75/144 (51%)
Frame = +2
Query: 2 DREDSVLIHNSLCPQPTTSLSSYIIASTSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGM 61
+ ED + + L + S+ A T ++S S + +N + ++ KK
Sbjct: 341 EEEDDDVAQDLLAGAKGFAFSATAAAKTKRSNSFSKGSTAAKSVESNEQAEKYASKK--- 511
Query: 62 VNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIK 121
RKN YRG+R R WGKW +EIR+PRK R+WLGTF T + AARA+D A I+
Sbjct: 512 ------RKNQ--YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIR 667
Query: 122 GSSAYLNFPELAAVLPRAASASPK 145
G+ A +NFP + + A+P+
Sbjct: 668 GNKAKVNFPVEPQLSSKRLKANPE 739
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -2
Query: 162 AITDQIELEAEAEPSQAVSSSSSSSSSSSSSHN 194
A+ + A A S A SSSSSSSS S SS N
Sbjct: 411 AVAENANPLAPASKS*ATSSSSSSSSKSESSLN 313
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 83.2 bits (204), Expect = 4e-17
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +2
Query: 1 MDREDSVLIHNSLCPQPTTSLSSYIIASTSSNSSSSLEEE-----EEEEEATNTKCKEKK 55
+D V +S P+ I + +SS EE+ E EE+ ++ K E +
Sbjct: 119 LDTLSDVFTSSSTHQPPSFHFDDVIPIPNNQGVASSCEEKKRVMIEVEEKGSDEKSGESE 298
Query: 56 KKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDV 115
+ G+ RKN YRG+R R WGKW +EIR+PRK R+ LGTF T + AA+A+D
Sbjct: 299 E---GIKKGKRVRKN--LYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFNTAEEAAQAYDD 463
Query: 116 AALTIKGSSAYLNFPE 131
AA I+G A LNFP+
Sbjct: 464 AAKRIRGDKAKLNFPD 511
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 82.8 bits (203), Expect = 5e-17
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Frame = +3
Query: 59 VGMVNKVNDRKNNPT---YRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDV 115
V +K++ NN T +RGVR R WG++ +EIR+P KKSR+WLGTF T + AARA+D
Sbjct: 123 VSAKSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDA 302
Query: 116 AALTIKGSSAYLNFPELAAVLPRAASASPKDIQVAAAKA 154
AA +G A NFP+ + + P D+ VA KA
Sbjct: 303 AARQFRGPKAKTNFPQSPS---PDNNTGPNDVVVANVKA 410
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 82.0 bits (201), Expect = 9e-17
Identities = 40/103 (38%), Positives = 57/103 (54%)
Frame = +3
Query: 28 STSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVS 87
S + S +E+ + + K+ + + K R+ YRG+R R WGKW +
Sbjct: 258 SFGKQNDSQIEKPPIAHQQQQQQPSTFKRSQPHIAEKPMKRQRKNLYRGIRQRPWGKWAA 437
Query: 88 EIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP 130
EIR+PRK R+WLGTF T + AARA+D A I+G A +NFP
Sbjct: 438 EIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFP 566
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 79.3 bits (194), Expect = 6e-16
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +3
Query: 25 IIASTSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGMVNKVNDRKNNPTYRGVRMRQWGK 84
I + SN S S E + ++++ + ++ + NN YRGVR R WGK
Sbjct: 270 INSGLKSNISQSKETSFSHQSSSSSSSSD---------HQTQEEDNNKHYRGVRRRPWGK 422
Query: 85 WVSEIREP-RKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP 130
+ +EIR+P RK SR+WLGTF T AA+A+D AA ++GS A LNFP
Sbjct: 423 FAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNFP 563
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 77.8 bits (190), Expect = 2e-15
Identities = 37/72 (51%), Positives = 49/72 (67%), Gaps = 2/72 (2%)
Frame = +2
Query: 61 MVNKVNDRK--NNPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAAL 118
MV +VN P YRGVR R WG++ +EIR+P KK+R+WLGTF + + AARA+D AA
Sbjct: 389 MVVEVNGSAVLKEPRYRGVRKRPWGRFAAEIRDPMKKARVWLGTFDSAEEAARAYDAAAR 568
Query: 119 TIKGSSAYLNFP 130
++G A NFP
Sbjct: 569 ALRGPKAKTNFP 604
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 77.4 bits (189), Expect = 2e-15
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +2
Query: 74 YRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP--E 131
YRGVR R WG++ +EIR+P KK+R+WLGTF TP+ AA A+D AA +++G+ A NFP
Sbjct: 185 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAP 364
Query: 132 LAAVLPRAASASPKDI 147
LAA L +A D+
Sbjct: 365 LAAGLCLDLNAPSSDL 412
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 75.5 bits (184), Expect = 8e-15
Identities = 35/84 (41%), Positives = 49/84 (57%)
Frame = +2
Query: 39 EEEEEEEATNTKCKEKKKKKVGMVNKVNDRKNNPTYRGVRMRQWGKWVSEIREPRKKSRI 98
+ + + NT K + M + N K YRGVR R WGKWV+EIR P+ ++R+
Sbjct: 926 QNQNQNHHLNTTLSFLSPKPIPMKHVANPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRL 1105
Query: 99 WLGTFPTPDMAARAHDVAALTIKG 122
WLGTF T + AA A+D AA ++G
Sbjct: 1106 WLGTFDTAEEAALAYDKAAYKLRG 1177
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 180 SSSSSSSSSSSSSHNEGSSLKGEDDMFLNLPDLT 213
SSSSSSSS S SS N + F + P +T
Sbjct: 650 SSSSSSSSPSPSSSNSSLPCSSPPNSFYSSPSVT 751
>AI967551
Length = 466
Score = 75.5 bits (184), Expect = 8e-15
Identities = 44/116 (37%), Positives = 65/116 (55%), Gaps = 2/116 (1%)
Frame = +2
Query: 17 PTTSLSSYIIASTSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGM-VNKVNDRKNNPTYR 75
P +S S S ++S E + EE +++ +G VN+ + + N YR
Sbjct: 110 PESSFGSPESFSLYNHSLPFNENDPEEMLLYGMITSSQQQAPIGSKVNEASSMEKNKAYR 289
Query: 76 GVRMRQWGKWVSEIREPRKKS-RIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP 130
GVR R WGK+ +EIR+ + R+WLGTF + + AA A+D AA ++GSSA LNFP
Sbjct: 290 GVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSSATLNFP 457
>TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (47%)
Length = 1174
Score = 75.5 bits (184), Expect = 8e-15
Identities = 41/92 (44%), Positives = 58/92 (62%), Gaps = 7/92 (7%)
Frame = +1
Query: 74 YRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFP--- 130
+RGVR R WG++ +EIR+P KKSR+WLGTF T + AARA+D AA +G A NFP
Sbjct: 199 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPFPS 378
Query: 131 -ELAAVLPRAAS---ASPKDIQVAAAKAAATV 158
+ P +S +S +D VAAA ++++
Sbjct: 379 DNVKNQSPSQSSTVESSSRDRDVAAAADSSSL 474
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 74.7 bits (182), Expect = 1e-14
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +2
Query: 74 YRGVRMRQWGKWVSEIREPRKK-SRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPEL 132
YRGVR R WGK+ +EIR+P K+ SR+WLGTF T AA+A+D AA ++GS A LNFP
Sbjct: 551 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFP-- 724
Query: 133 AAVLPRAASASPKD 146
L AA+A+ D
Sbjct: 725 ---LDVAAAAASGD 757
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 72.8 bits (177), Expect = 6e-14
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +1
Query: 74 YRGVRMRQWGKWVSEIREP-RKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPEL 132
YRGVR R WGK+ +EIR+P RK +R+WLGTF T AA+A+D AA ++G A LNFP
Sbjct: 184 YRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFP-- 357
Query: 133 AAVLPRAASASPK 145
A ASPK
Sbjct: 358 ----LEAGKASPK 384
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.122 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,075,913
Number of Sequences: 28460
Number of extensions: 90635
Number of successful extensions: 3361
Number of sequences better than 10.0: 209
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of query: 257
length of database: 4,897,600
effective HSP length: 88
effective length of query: 169
effective length of database: 2,393,120
effective search space: 404437280
effective search space used: 404437280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC149079.10