TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149050.7 + phase: 0 /pseudo
         (887 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15673 similar to UP|Q8LG90 (Q8LG90) Dihydrodipicolinate reduct...    30  2.2
TC13199 similar to UP|Q94IC5 (Q94IC5) BURP domain-containing pro...    28  8.4

>TC15673 similar to UP|Q8LG90 (Q8LG90) Dihydrodipicolinate reductase-like
           protein, partial (10%)
          Length = 682

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 9   KETVTKLGELVVESTMKHFKYLTQHKKITT 38
           KE  + L EL      KHFKYL QH  ++T
Sbjct: 180 KEAKSALMELK*HQKQKHFKYLPQHDTVST 91


>TC13199 similar to UP|Q94IC5 (Q94IC5) BURP domain-containing protein
           (Fragment), partial (19%)
          Length = 426

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 132 NLH*HLDLPIQKISRAYCL 150
           +LH HL LP Q++ R +CL
Sbjct: 263 SLHQHLHLPFQQLQRCFCL 207


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.362    0.160    0.608 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,272,447
Number of Sequences: 28460
Number of extensions: 259698
Number of successful extensions: 2755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 2112
length of query: 887
length of database: 4,897,600
effective HSP length: 98
effective length of query: 789
effective length of database: 2,108,520
effective search space: 1663622280
effective search space used: 1663622280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 59 (27.3 bits)