BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149050.11 - phase: 0
(163 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10409 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (17%) 90 2e-19
BP076839 86 4e-18
AV767390 85 7e-18
TC11959 weakly similar to UP|Q99ML9 (Q99ML9) Arkadia, partial (3%) 67 2e-12
TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Ara... 64 2e-11
TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger prote... 61 1e-10
AV411427 60 2e-10
AV419203 60 2e-10
BP068463 57 2e-09
BP037094 55 8e-09
TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 54 1e-08
TC15641 54 2e-08
TC11480 similar to UP|Q8VYW5 (Q8VYW5) AT5g45290/K9E15_7, partial... 53 3e-08
TC17068 similar to UP|Q8L775 (Q8L775) RING finger-like protein, ... 53 3e-08
AU252073 52 4e-08
BP055954 52 4e-08
TC19649 weakly similar to UP|RNF6_HUMAN (Q9Y252) RING finger pro... 52 4e-08
TC8730 similar to PIR|H96764|H96764 protein RING zinc finger pro... 52 5e-08
AV411204 52 5e-08
TC11185 similar to UP|Q9SXW6 (Q9SXW6) Ring finger protein (Fragm... 52 5e-08
>TC10409 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (17%)
Length = 715
Score = 90.1 bits (222), Expect = 2e-19
Identities = 36/63 (57%), Positives = 46/63 (72%)
Frame = +3
Query: 101 SELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGD 160
+E +L P+D+ECCIC+ Y DG EL+ LPC HHFH CI +WL+ ATCPLCK+NI G+
Sbjct: 12 NERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 191
Query: 161 IMV 163
V
Sbjct: 192 EQV 200
>BP076839
Length = 392
Score = 85.5 bits (210), Expect = 4e-18
Identities = 34/55 (61%), Positives = 40/55 (71%)
Frame = -3
Query: 102 ELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
E L +D+ECCICL Y DG EL +LPC HHFHC C+ +WL ATCPLCK+NI
Sbjct: 390 EHMLSAEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLCMNATCPLCKYNI 226
>AV767390
Length = 447
Score = 84.7 bits (208), Expect = 7e-18
Identities = 32/49 (65%), Positives = 37/49 (75%)
Frame = -3
Query: 108 DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
+D+ECCICL Y DG EL LPC HHFHC C+ +WL ATCPLCK+NI
Sbjct: 442 EDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNI 296
>TC11959 weakly similar to UP|Q99ML9 (Q99ML9) Arkadia, partial (3%)
Length = 630
Score = 67.0 bits (162), Expect = 2e-12
Identities = 34/96 (35%), Positives = 52/96 (53%)
Frame = +1
Query: 58 GASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLC 117
GASED I L ++ + + + SH+ S+ ++ +D ECCICL
Sbjct: 55 GASEDQISLLASWKCKAAHANLDL------------SHDDPQTSDRLIY-EDPECCICLA 195
Query: 118 PYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
Y D E+ +LPC+H FH +C+ +WL+ + CPLCK
Sbjct: 196 KYKDKEEVRQLPCSHLFHPQCVDQWLKIISCCPLCK 303
>TC9277 similar to GB|AAP13413.1|30023760|BT006305 At3g55530 {Arabidopsis
thaliana;}, partial (79%)
Length = 1297
Score = 63.5 bits (153), Expect = 2e-11
Identities = 31/102 (30%), Positives = 48/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 60 SEDDIKSLPM--YRFCQPNVMIMVDKNKTQLEARTGSHNRSHISELSLHPDDSECCICLC 117
+E++I +LP+ Y+ P+ + + A + + + + D+ C +CL
Sbjct: 720 TEEEINALPVHKYKVSGPSSGSSLPQASPSTSAEKEQDKSNAVGSMKVSDDELTCSVCLE 899
Query: 118 PYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIG 159
G L LPC H FH CI WLR + TCP+CKF G
Sbjct: 900 QVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGTG 1025
>TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger protein RHA2a
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (35%)
Length = 442
Score = 60.8 bits (146), Expect = 1e-10
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +2
Query: 97 RSHISELS-LHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLR-TKATCPLCKF 154
RS SEL + PDD+EC +CL + +G ++ RL C H FH +C+ +WL+ ATCPLC+
Sbjct: 185 RSSWSELEHVVPDDTECRVCLSEFEEGEKVRRLKCKHTFHKDCLDKWLQECWATCPLCRK 364
Query: 155 NIRIGDIM 162
+ D++
Sbjct: 365 QVLPCDVV 388
>AV411427
Length = 425
Score = 60.1 bits (144), Expect = 2e-10
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Frame = +1
Query: 38 CIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEARTGSHNR 97
CI+ I+ + L Q GA+ + I +LP Y+F + KNK E+ + +
Sbjct: 130 CIISILGVREDLAQ----NRGATSESINALPTYKF-------KMKKNKRNSESNSAAAES 276
Query: 98 SHIS-----ELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGR 141
++ E + +D+ CCICL Y + EL LPC+H FH +C+ +
Sbjct: 277 GVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDK 423
>AV419203
Length = 393
Score = 59.7 bits (143), Expect = 2e-10
Identities = 23/49 (46%), Positives = 31/49 (62%)
Frame = +1
Query: 108 DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNI 156
D SEC +CL + +G E+ LPC H+FH ECI WLR CP C+ ++
Sbjct: 244 DCSECPVCLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSV 390
>BP068463
Length = 425
Score = 56.6 bits (135), Expect = 2e-09
Identities = 23/35 (65%), Positives = 26/35 (73%)
Frame = -1
Query: 129 PCTHHFHCECIGRWLRTKATCPLCKFNIRIGDIMV 163
PCTHH H CI RWLRTKATCPL +FN+ D +V
Sbjct: 425 PCTHHSHSGCISRWLRTKATCPLPQFNLLRADTLV 321
>BP037094
Length = 502
Score = 54.7 bits (130), Expect = 8e-09
Identities = 21/45 (46%), Positives = 29/45 (63%), Gaps = 1/45 (2%)
Frame = -3
Query: 110 SECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCK 153
S C ICL + DG ++ LP C HHFH CI +WL + ++CP C+
Sbjct: 443 SSCVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCR 309
>TC11328 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (27%)
Length = 793
Score = 54.3 bits (129), Expect = 1e-08
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 111 ECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNIRIGD 160
EC +CL + D L +P C+H FH EC+ WL ++TCP+C+ N+ GD
Sbjct: 23 ECAVCLNEFRDHETLRLIPKCSHVFHAECVDAWLVNQSTCPVCRANLLQGD 175
>TC15641
Length = 525
Score = 53.5 bits (127), Expect = 2e-08
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 97 RSHISELSLHPDDSE-CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
R +IS ++ D E CCIC Y +G + L C H FH +CI +WL K CP+CK
Sbjct: 155 RLYISFMAESSSDPEPCCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICK 328
>TC11480 similar to UP|Q8VYW5 (Q8VYW5) AT5g45290/K9E15_7, partial (8%)
Length = 502
Score = 52.8 bits (125), Expect = 3e-08
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 108 DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLR-TKATCPLCKFNI 156
D +C ICL Y +G ++ LPC H +H C+ +WL+ CPLC+ N+
Sbjct: 110 DAEQCHICLAEYEEGDQIRVLPCNHEYHKLCVDKWLKEIHGVCPLCRGNV 259
>TC17068 similar to UP|Q8L775 (Q8L775) RING finger-like protein, partial
(9%)
Length = 549
Score = 52.8 bits (125), Expect = 3e-08
Identities = 22/46 (47%), Positives = 27/46 (57%)
Frame = +2
Query: 108 DDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
DD +C IC YV E+ L C H +H CI +WLR K CP+CK
Sbjct: 122 DDIKCSICQEEYVAADEVGSLKCEHKYHVVCIQQWLRLKNWCPICK 259
>AU252073
Length = 258
Score = 52.4 bits (124), Expect = 4e-08
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 108 DDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCKFNIR 157
+D++C ICL Y + L +P C H FH CI WLR ++TCP+C+ ++
Sbjct: 22 EDTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLK 174
>BP055954
Length = 518
Score = 52.4 bits (124), Expect = 4e-08
Identities = 33/125 (26%), Positives = 54/125 (42%), Gaps = 2/125 (1%)
Frame = +1
Query: 31 IVFGALFCIVQIIALAYALTQPLRIREGASEDDIKSLPMYRFCQPNVMIMVDKNKTQLEA 90
I G LF + +I +Y + LR + D + LP F + + L+
Sbjct: 58 IALGFLFLLSTLILSSYLCCRALRHNRRRAPDGVV-LPRIIFVAEDGDEEEGPRVSGLDP 234
Query: 91 RT-GSHNRSHISELSLHPDDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKAT 148
S+ R + ++ C ICLC + + L +P C HHFH C+ WL+ +
Sbjct: 235 NVINSYPRFQYAAAERGHGETTCSICLCEFKEAEMLRMMPECRHHFHLCCLDSWLKLNGS 414
Query: 149 CPLCK 153
CP+C+
Sbjct: 415 CPVCR 429
>TC19649 weakly similar to UP|RNF6_HUMAN (Q9Y252) RING finger protein 6
(RING-H2 protein), partial (4%)
Length = 523
Score = 52.4 bits (124), Expect = 4e-08
Identities = 21/48 (43%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 PDDSECCICLCPYVDGTELYRLP-CTHHFHCECIGRWLRTKATCPLCK 153
PDD C ICL Y+ + +P C H FH +CI WL A+CP+C+
Sbjct: 143 PDDKACPICLSEYMPKETVKTIPECEHCFHAQCIDEWLPLNASCPICR 286
>TC8730 similar to PIR|H96764|H96764 protein RING zinc finger protein
F25P22.18 [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (23%)
Length = 583
Score = 52.0 bits (123), Expect = 5e-08
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +3
Query: 101 SELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCK 153
++ S H D +C IC Y EL +L C H FH +CI +WL K CP+CK
Sbjct: 174 NDTSKHQLDRKCTICQEEYESDDELGKLKCEHCFHFQCIKQWLVLKNFCPVCK 332
>AV411204
Length = 427
Score = 52.0 bits (123), Expect = 5e-08
Identities = 20/49 (40%), Positives = 29/49 (58%)
Frame = +2
Query: 112 CCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIGD 160
C IC GTE+ +LPC+H +H CI WL + +CPLC++ + D
Sbjct: 224 CAICKDVLAPGTEVNQLPCSHLYHPSCILPWLSARNSCPLCRYELPTDD 370
>TC11185 similar to UP|Q9SXW6 (Q9SXW6) Ring finger protein (Fragment),
partial (79%)
Length = 807
Score = 52.0 bits (123), Expect = 5e-08
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 100 ISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHCECIGRWLRTKATCPLCKFNIRIG 159
++E L D C IC + ++ RLPC+H +H +CI WL + TCP+C+F +
Sbjct: 311 LTEEELRGKDMACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTD 490
Query: 160 D 160
D
Sbjct: 491 D 493
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,063,784
Number of Sequences: 28460
Number of extensions: 69427
Number of successful extensions: 736
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of query: 163
length of database: 4,897,600
effective HSP length: 83
effective length of query: 80
effective length of database: 2,535,420
effective search space: 202833600
effective search space used: 202833600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC149050.11