TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149040.5 - phase: 0 
         (476 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partia...    30  1.1
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,...    28  2.5
TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protei...    27  5.6
TC18660                                                                27  5.6
BP055755                                                               27  7.3
TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2...    27  7.3
TC9686 similar to GB|CAA20565.1|3549654|ATT16L1 metal-transporti...    27  9.5

>TC10576 similar to UP|Q93ZQ3 (Q93ZQ3) AT3g63200/F16M2_50, partial (39%)
          Length = 751

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 11/89 (12%)
 Frame = -2

Query: 292 SKPINLATS---------PEFFFYTNAPTGQRKAFVDAWSKVRRKSMKHLGVRSGVAHEA 342
           S P++ +TS         P  +  T +   Q+KAF + WS V       +    GV H  
Sbjct: 456 SNPLSFSTSSSVVASVPKPNAWILT*SVRFQQKAFPNIWSTVSETPSSTMPTTDGVEHVR 277

Query: 343 YTQWVIDRAEEIGM--PYPAMRYVSSSTP 369
           +  +    +       P+P  R   SSTP
Sbjct: 276 WFSFSFSFSHAFAFDDPFPRERTRRSSTP 190


>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
           (74%)
          Length = 1591

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 196 RTLKG-RGYILCCISLLYRWFISHLP 220
           R LK  RG++ CC    + WF+S LP
Sbjct: 42  RVLKSKRGFLCCCCWEFFSWFLSPLP 119


>TC18734 similar to UP|Q8LFM3 (Q8LFM3) Pectinesterase-like protein, partial
           (47%)
          Length = 929

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = -1

Query: 114 DVSNHLITKSHIRGFTSKYLLDQANLGTTRQ 144
           +V NH++    ++ +T K  +DQ NL  T Q
Sbjct: 218 EVENHVVISYQVKSWTRKLTIDQNNLLRTAQ 126


>TC18660 
          Length = 893

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = +2

Query: 352 EEIGMPYPAMRYVSSSTPSMPLP 374
           E   MP P+M ++S +TP + LP
Sbjct: 800 EAFDMPTPSMEWISGTTPHLKLP 868


>BP055755 
          Length = 273

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
 Frame = -3

Query: 361 MRYVSSSTPS-MPLPLLPATQDMYQEHLAMESREKQVWKARY 401
           +++ S S P  +P P  P+T   +QE  A  +R  ++W+ +Y
Sbjct: 271 VKFPSHSNPCPIPPPYDPSTFPSFQEGKAYATRPVEIWEDKY 146


>TC11706 homologue to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2  , partial
           (15%)
          Length = 472

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 21/51 (40%)
 Frame = +1

Query: 164 LDDFVDMNAIEIFHSKNPVPTLLADTYHAIHDRTLKGRGYILCCISLLYRW 214
           L  FV    + +F      P L    YH IH   L+    +L   S+L+ W
Sbjct: 172 LKGFVRCFFLPLFQLITEPPLLQNSEYHRIHFEMLRCSQDVLALFSILWNW 324


>TC9686 similar to GB|CAA20565.1|3549654|ATT16L1 metal-transporting P-type
           ATPase (fragment) {Arabidopsis thaliana;} , partial (7%)
          Length = 714

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 80  NLVGLPIAEKTPFTGPGTSLTPLVIAKDLYLKTSDVSNHLITKSHIRGFTSKYLLD 135
           N+VG+PIA    F   GT LTP +    + L +  V  + +          K +LD
Sbjct: 48  NIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQILD 215


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,115,017
Number of Sequences: 28460
Number of extensions: 110653
Number of successful extensions: 575
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of query: 476
length of database: 4,897,600
effective HSP length: 94
effective length of query: 382
effective length of database: 2,222,360
effective search space: 848941520
effective search space used: 848941520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)