TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149039.1 + phase: 0 /pseudo
         (434 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19435 similar to UP|Q39036 (Q39036) NADPH-ferrihemoprotein red...    25  0.77
TC20139 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mu...    28  3.9
TC8056                                                                 27  6.6
AW719194                                                               27  6.6
TC10788 weakly similar to UP|Q8YG29 (Q8YG29) Cytochrome C-type b...    27  8.6

>TC19435 similar to UP|Q39036 (Q39036) NADPH-ferrihemoprotein reductase ,
           partial (12%)
          Length = 459

 Score = 25.4 bits (54), Expect(2) = 0.77
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 304 WKQFFLWK--WRSHLSV*SWKQSYPRLNGA 331
           W +   W+  W+  + +*SW+ SYP +  +
Sbjct: 182 WSRRRRWRRRWKGRVCL*SWRTSYPAVKSS 93



 Score = 23.1 bits (48), Expect(2) = 0.77
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 240 ITLLPIDLR*MVQLRPPTRISRELSR 265
           + LLP+DLR M     P R + E+ R
Sbjct: 288 LALLPVDLRQMRTTTQPMRTAMEVVR 211


>TC20139 similar to GB|AAG31805.1|11139702|AF315590 Pumilio 2 {Mus
           musculus;} , partial (7%)
          Length = 425

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
 Frame = -3

Query: 97  GILCQGSCYGQVTTGWP---WSMIATSTPESATNVKSMLIRFMCLRTLSMLFHPHG 149
           G  C  +C+   TT +P   W+ + T+   S+     +L    C RTL +  HP+G
Sbjct: 216 GFPCSSTCW---TT*FPY*SWANMLTAPKISSITFCCVLGSLQCSRTLCITRHPYG 58


>TC8056 
          Length = 730

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 85  MYMTVPSGPMLQGILCQGSCYGQVTTGWPWSMIATS 120
           ++ +VP  P+LQ +L QG C G+     P  + +TS
Sbjct: 589 IWSSVPEIPLLQTLLHQGQCGGRFYRRCPHKVDSTS 482


>AW719194 
          Length = 526

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 85  MYMTVPSGPMLQGILCQGSCYGQVTTGWPWSMIATS 120
           ++ +VP  P+LQ +L QG C G+     P  + +TS
Sbjct: 115 IWSSVPEIPLLQTLLHQGQCGGRFYRRCPHKVDSTS 8


>TC10788 weakly similar to UP|Q8YG29 (Q8YG29) Cytochrome C-type biogenesis
           protein, partial (25%)
          Length = 656

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 10/54 (18%)
 Frame = -2

Query: 86  YMTVPSGPM-------LQGIL-CQGSCYGQVT--TGWPWSMIATSTPESATNVK 129
           Y T+PS          L+G+L C  S    VT  T W W +++T+T   AT+ K
Sbjct: 553 YTTLPSRTRPPNRNFALEGLLRCFSSMSVGVT*NTNWSWKLLSTTTMNPATHPK 392


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.354    0.153    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,437,478
Number of Sequences: 28460
Number of extensions: 127794
Number of successful extensions: 1508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of query: 434
length of database: 4,897,600
effective HSP length: 93
effective length of query: 341
effective length of database: 2,250,820
effective search space: 767529620
effective search space used: 767529620
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 57 (26.6 bits)