BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149038.5 + phase: 0 /partial
(345 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16064 similar to UP|Q93VC9 (Q93VC9) At1g02300/T6A9_10, partial... 276 3e-75
TC15200 similar to UP|Q94G21 (Q94G21) Cathepsin B-like cysteine ... 179 8e-46
BP040674 123 1e-41
TC14433 similar to UP|Q41057 (Q41057) Cysteine protease , complete 103 3e-23
TC17102 UP|CAE45588 (CAE45588) Papain-like cysteine proteinase-l... 98 2e-21
TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precur... 94 4e-20
TC14292 similar to UP|O24323 (O24323) Cysteine proteinase precur... 92 1e-19
TC10787 similar to UP|CYSP_VIGMU (P12412) Vignain precursor (Be... 68 3e-12
AV769446 64 3e-11
TC11715 weakly similar to UP|Q38886 (Q38886) SAG12 protein, part... 62 1e-10
TC15142 similar to UP|Q945R8 (Q945R8) Cysteine proteinase (Fragm... 60 7e-10
TC15660 weakly similar to UP|Q38886 (Q38886) SAG12 protein, part... 59 1e-09
TC20011 similar to GB|CAA40073.1|1345573|PVEPC1 endopeptidase (E... 58 3e-09
BP068646 57 3e-09
TC18116 similar to UP|AAP32193 (AAP32193) Cysteine protease 14, ... 55 2e-08
TC8562 similar to UP|O24322 (O24322) Cysteine proteinase precurs... 54 3e-08
TC16185 similar to UP|O24321 (O24321) Cysteine proteinase precur... 52 1e-07
TC15143 similar to UP|CYSP_PEA (P25804) Cysteine proteinase 15A ... 49 9e-07
TC12126 similar to PIR|S49166|S49166 cysteine proteinase precur... 49 1e-06
BP070099 48 3e-06
>TC16064 similar to UP|Q93VC9 (Q93VC9) At1g02300/T6A9_10, partial (41%)
Length = 558
Score = 276 bits (707), Expect = 3e-75
Identities = 133/172 (77%), Positives = 148/172 (85%)
Frame = +1
Query: 1 IGDAETDEKLNGLKLNSHILQESIAKQINENPEAGWEAAINPRFSNFTVGQFKRLLGVKQ 60
I +AE ++L+ LKLNS ILQESIAK+INENP AGWEAAI+PRFSN+TV QFKRLLGVK
Sbjct: 76 IAEAEP-QQLSTLKLNSRILQESIAKEINENPGAGWEAAISPRFSNYTVAQFKRLLGVKP 252
Query: 61 APKKELLSTPVVTHPKSLKLPKEFDARTAWSQCSTIGKILGSNLILMLMMIQGHCGSCWA 120
+PKKEL STPVV+HP+SLKLPK FDARTAWSQCSTIG+IL QGHCGSCWA
Sbjct: 253 SPKKELRSTPVVSHPRSLKLPKSFDARTAWSQCSTIGRILD----------QGHCGSCWA 402
Query: 121 FGAVESLQDRFCIHFDMNISLSVNDLLACCGFLCGAGCDGGTPIYAWRYLAH 172
FGAVESL DRFCIH D+N+SLSVNDLLACCGFLCG+GCDGG P+YAWRYLAH
Sbjct: 403 FGAVESLSDRFCIHLDVNVSLSVNDLLACCGFLCGSGCDGGYPLYAWRYLAH 558
>TC15200 similar to UP|Q94G21 (Q94G21) Cathepsin B-like cysteine proteinase,
partial (23%)
Length = 541
Score = 179 bits (453), Expect = 8e-46
Identities = 80/96 (83%), Positives = 88/96 (91%)
Frame = +2
Query: 250 VFEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIK 309
V+EDFAHYKSGVYKHITGS LGGHAVKLIGWGT+DEGEDYWL+ANQWN +WGDDGYF I+
Sbjct: 2 VYEDFAHYKSGVYKHITGSQLGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIR 181
Query: 310 RGTNECGIEDDVTAGLPSTKNIVREVTDMDVDAGVS 345
RGTNECGIE+DVTAGLPST+N+ R V DMD DA VS
Sbjct: 182 RGTNECGIEEDVTAGLPSTQNMGRWVMDMDADADVS 289
>BP040674
Length = 451
Score = 123 bits (309), Expect(2) = 1e-41
Identities = 54/72 (75%), Positives = 63/72 (87%)
Frame = -2
Query: 274 AVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIEDDVTAGLPSTKNIVR 333
AVKLIGWGT+DEGEDYWL+AN W+ +WGDDGYF I+RGTNECGIE+DVTAGLPS +N+ R
Sbjct: 351 AVKLIGWGTTDEGEDYWLIANPWDRSWGDDGYFMIRRGTNECGIEEDVTAGLPSPQNMGR 172
Query: 334 EVTDMDVDAGVS 345
V D+D DA VS
Sbjct: 171 WVMDLDADADVS 136
Score = 62.8 bits (151), Expect(2) = 1e-41
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -1
Query: 241 NGPVEVAFTVFEDFAHYKSGVYKHITGSALGGH 273
NGPVEVAFTV+EDFA Y+SGVY+HITGS +GGH
Sbjct: 451 NGPVEVAFTVYEDFAPYQSGVYQHITGSPIGGH 353
>TC14433 similar to UP|Q41057 (Q41057) Cysteine protease , complete
Length = 1392
Score = 103 bits (258), Expect = 3e-23
Identities = 66/214 (30%), Positives = 93/214 (42%), Gaps = 8/214 (3%)
Frame = +1
Query: 112 QGHCGSCWAFGAVESLQDRFCIHFDMNISLSVNDLLACCGFLCGAGCDGGTPIYAWRYLA 171
Q HCGSCW F +L+ + NISLS L+ C G GC+GG P A+ Y+
Sbjct: 532 QAHCGSCWTFSTTGALEAAYAQAHGKNISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIK 711
Query: 172 HHGVVTEECD-PYFDQI-GCSHPGCEPAYQTPKCVRKCVKGNQIWKRSKHYSVKAYRVKS 229
++G + E + PY + C A + V + K + ++
Sbjct: 712 YNGGIALEKEYPYTAKDEACKFTAENVAVRVLDSVNITLGAEDELKHAVAFA-------- 867
Query: 230 DPQDIMAEVYKNGPVEVAFTVFEDFAHYKSGVYKHITGSALGG------HAVKLIGWGTS 283
PV VAF V + F YK GVY T G HAV +G+G
Sbjct: 868 ------------RPVSVAFQVVDGFRLYKEGVY---TSDTCGNTPMDVNHAVLAVGYGV- 999
Query: 284 DEGEDYWLLANQWNTNWGDDGYFKIKRGTNECGI 317
+ YW++ N W + WGD GYFK++ G N CG+
Sbjct: 1000ENNVPYWIIKNSWGSTWGDHGYFKMELGKNMCGV 1101
>TC17102 UP|CAE45588 (CAE45588) Papain-like cysteine proteinase-like protein
1, complete
Length = 1086
Score = 98.2 bits (243), Expect = 2e-21
Identities = 80/268 (29%), Positives = 118/268 (43%), Gaps = 17/268 (6%)
Frame = +1
Query: 80 LPKEFDARTAWSQCSTIGKILGSNLILMLMMIQGHCGSCWAFGAVESLQDRFCIHFDMNI 139
LPK+FD W + + + QG CGSCW+F A +L+ + +
Sbjct: 382 LPKDFD----WREHGAVTPVKN----------QGSCGSCWSFSATGALEGAHFLSTGELV 519
Query: 140 SLSVNDLLAC----C----GFLCGAGCDGGTPIYAWRYLAHHG-VVTEECDPYFDQIGCS 190
SLS L+ C C C +GC+GG A+ Y+ ++G V+ EE PY G +
Sbjct: 520 SLSEQQLVDCDHQQCDPEEAGSCDSGCNGGLMNSAFEYILNNGGVMREEDYPYS---GTN 690
Query: 191 HPGCEPAYQTPKCVRKCVKGNQIWKRSKHYSVKAYRVKSDPQDIMAEVYKNGPVEVAFTV 250
C+ + K ++SV V D I A + KNGP+ VA
Sbjct: 691 GGTCK--FDKAKIAASVA----------NFSV----VSRDEDQIAANLVKNGPLAVAINA 822
Query: 251 FEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSD------EGEDYWLLANQWNTNWGDDG 304
Y GV S H V L+G+G+ + + YW++ N W NWG++G
Sbjct: 823 VY-MQTYVGGVSCPYVCSKKLNHGVLLVGYGSESYAPIRMKQKPYWIIKNSWGENWGENG 999
Query: 305 YFKIKRGTNECGIEDDVT--AGLPSTKN 330
Y+KI RG N CG++ V+ A L +T N
Sbjct: 1000YYKICRGRNICGVDSMVSTVAALHTTGN 1083
>TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precursor ,
partial (92%)
Length = 1416
Score = 93.6 bits (231), Expect = 4e-20
Identities = 84/302 (27%), Positives = 123/302 (39%), Gaps = 22/302 (7%)
Frame = +2
Query: 43 RFSNFTVGQFKR-LLGVK------QAPKKELLSTPVVTHPKSLKLPKEFDARTAWSQCST 95
+FS+ T +F+R LGVK A K +L T LP +FD W
Sbjct: 326 KFSDLTPAEFRRQFLGVKALRLPADAQKAPILPTR--------DLPDDFD----WRDKGA 469
Query: 96 IGKILGSNLILMLMMIQGHCGSCWAFGAVESLQDRFCIHFDMNISLSVNDLLACCGFL-- 153
+ + QG CGSCWAF A +L+ + +S+S L+ C
Sbjct: 470 VTPVKD----------QGACGSCWAFSATGALEGSHYLTTGKLVSISEQQLVDCDHVCDP 619
Query: 154 -----CGAGCDGGTPIYAWRYLAHHGVVTEECD-PYFDQIGCSHPGCEPAYQTPKCVRKC 207
C +GC+GG A+ Y+ G V E D PY + G
Sbjct: 620 EEYNSCDSGCNGGLMNNAFEYILQSGGVMREKDYPYTGRDGTC----------------- 748
Query: 208 VKGNQIWKRSKHYSVKAYRVKS-DPQDIMAEVYKNGPVEVAFTVFEDFAHYKSGVYKHIT 266
+ K SV + V S D I A + NGP+ VA + +I
Sbjct: 749 ----KFDKSKIAASVANFSVGSLDEDQIAANLVMNGPLAVAINAVYMQTYVGGVSCPYIC 916
Query: 267 GSALGGHAVKLIGWGTSD------EGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIEDD 320
G L H V L+G+G + + + YW++ N W +WG++GY+KI RG N CG++
Sbjct: 917 GKNLD-HGVLLVGYGKAGYAPIRFKNKAYWIIKNSWGESWGENGYYKICRGRNVCGVDSM 1093
Query: 321 VT 322
V+
Sbjct: 1094VS 1099
>TC14292 similar to UP|O24323 (O24323) Cysteine proteinase precursor ,
partial (95%)
Length = 1792
Score = 92.0 bits (227), Expect = 1e-19
Identities = 67/214 (31%), Positives = 105/214 (48%), Gaps = 8/214 (3%)
Frame = +3
Query: 112 QGHCGSCWAFGAVESLQDRFCIHFDMNISLSVNDLLACCGFLCGAGCDGGTPIYAWRYLA 171
QG CGSCWAF AV +++ I +SLSV +L+ C GC+GG YA+ ++
Sbjct: 507 QGSCGSCWAFSAVTAVESINKIVTGDLVSLSVQELVDCDRSY-NEGCNGGLMDYAFDFII 683
Query: 172 HHGVVTEECD-PYFDQIGCSHPGCEPAYQTPKCVRKCVKGNQIWKRSKHYSVKAYR-VKS 229
++G + E D PY G +C +Q K +K S+ Y V +
Sbjct: 684 NNGGIDSEEDYPYKGVDG-----------------RC---DQYRKNAKVVSIDDYEDVPT 803
Query: 230 DPQDIMAEVYKNGPVEVAFTVF-EDFAHYKSGVYKHITGSALGGHAVKLIGWGTSDEGED 288
+ + + N P+ VA +F Y SG++ G+AL H V +G+GT + G D
Sbjct: 804 YDEIALKKAVANQPISVAIEGGGREFQLYDSGIFTGRCGTALD-HGVVAVGYGT-ENGLD 977
Query: 289 YWLLANQWNTNWGDDGYFKIKRG-----TNECGI 317
YW++ N W +WG+ GY +++R + +CGI
Sbjct: 978 YWIVRNSWGASWGEGGYIRLERNLGNARSGKCGI 1079
>TC10787 similar to UP|CYSP_VIGMU (P12412) Vignain precursor (Bean
endopeptidase) (Cysteine proteinase)
(Sulfhydryl-endopeptidase) (SH-EP) , partial (34%)
Length = 502
Score = 67.8 bits (164), Expect = 3e-12
Identities = 33/107 (30%), Positives = 57/107 (52%), Gaps = 5/107 (4%)
Frame = +1
Query: 227 VKSDPQDIMAEVYKNGPVEVAFTVF-EDFAHYKSGVYKHITGSALGGHAVKLIGWGTSDE 285
V ++ + + N PV VA DF Y GV+ G+ L H V ++G+GT+ +
Sbjct: 22 VPANDEAALLNAVANPPVSVAIDAGGSDFPFYSEGVFTGDCGTGLD-HGVAVVGYGTTVD 198
Query: 286 GEDYWLLANQWNTNWGDDGYFKIKRGTNE----CGIEDDVTAGLPST 328
G DYW++ N W WG+ GY +++R ++ CGI + + +P++
Sbjct: 199 GTDYWIVKNSWGPEWGEQGYIRMQRNISDKEGLCGIAMEASYPIPNS 339
>AV769446
Length = 489
Score = 64.3 bits (155), Expect = 3e-11
Identities = 29/94 (30%), Positives = 51/94 (53%), Gaps = 2/94 (2%)
Frame = -1
Query: 220 YSVKAYR-VKSDPQDIMAEVYKNGPVEVAFTVF-EDFAHYKSGVYKHITGSALGGHAVKL 277
+ + Y+ V S+ ++ + + PV V +DF HY G+++ G+ L HA+
Sbjct: 489 FPIHGYKWVSSNNEEALIQAVAKQPVIVGIDAAGDDFKHYSGGIFRGQCGTYLN-HAITF 313
Query: 278 IGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRG 311
+G+G +G YW+ N W T+WG+ GY ++ RG
Sbjct: 312 VGFGIDKDGLKYWIGKNSWGTDWGEGGYIRLPRG 211
>TC11715 weakly similar to UP|Q38886 (Q38886) SAG12 protein, partial (32%)
Length = 566
Score = 62.0 bits (149), Expect = 1e-10
Identities = 38/110 (34%), Positives = 51/110 (45%), Gaps = 5/110 (4%)
Frame = +1
Query: 226 RVKSDPQDIMAEVYKNGPVEVAFTVFED-FAHYKSGVYKHITGSALGGHAVKLIGWGTSD 284
+V + + ++ N PV VA F Y GV+ G L HAV ++G+G
Sbjct: 40 KVPASNEAMLKAAAANQPVSVAIDAGGFLFQLYSGGVFFGFCGKQLN-HAVTIVGYGRQV 216
Query: 285 EGEDYWLLANQWNTNWGDDGYFKIKRGT----NECGIEDDVTAGLPSTKN 330
G YWL+ N W +WG+ GY KI R T CGI D + ST N
Sbjct: 217 NGPKYWLVKNSWGADWGESGYMKILRDTLDKDGTCGIAMDASYPTLSTIN 366
>TC15142 similar to UP|Q945R8 (Q945R8) Cysteine proteinase (Fragment),
partial (36%)
Length = 646
Score = 59.7 bits (143), Expect = 7e-10
Identities = 31/102 (30%), Positives = 49/102 (47%), Gaps = 6/102 (5%)
Frame = +1
Query: 227 VKSDPQDIMAEVYKNGPVEVAFTVFEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSD-- 284
V D I A + K+GP+ + + +I G L H V L+G+G
Sbjct: 58 VSVDEDQIAANLVKHGPLAIGINAVFMQTYIGGVSCPYICGKHLD-HGVLLVGYGAGAYS 234
Query: 285 ----EGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIEDDVT 322
+ + YW++ N W WG++GY+KI RG N CG++ V+
Sbjct: 235 PIRLKEKPYWIIKNSWGETWGENGYYKICRGRNVCGVDSMVS 360
>TC15660 weakly similar to UP|Q38886 (Q38886) SAG12 protein, partial (34%)
Length = 618
Score = 58.9 bits (141), Expect = 1e-09
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 254 FAHYKSGVYKHITGSALGGHAVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRGTN 313
F Y GV+ G L HAV ++G+G G YWL+ N W +WG+ GY KI R T
Sbjct: 181 FQLYSGGVFSGFCGKELN-HAVTVVGYGREVNGPKYWLVKNSWGADWGEAGYMKILRDTQ 357
Query: 314 E----CGI 317
+ CGI
Sbjct: 358 DKDGTCGI 381
>TC20011 similar to GB|CAA40073.1|1345573|PVEPC1 endopeptidase (EP-C1)
{Phaseolus vulgaris;} , partial (29%)
Length = 472
Score = 57.8 bits (138), Expect = 3e-09
Identities = 29/84 (34%), Positives = 43/84 (50%), Gaps = 7/84 (8%)
Frame = +1
Query: 241 NGPVEVAFTVFEDFAHYKSGVYKH---ITGSALGGHAVKLIGWGTSDEGEDYWLLANQWN 297
N PV VA D Y GV+ G+ L H V ++G+G + G YW++ N W
Sbjct: 40 NQPVSVAVEAGVDMQLYSEGVFMGGGVDCGTQLN-HGVAIVGYGATQYGTQYWIVKNSWG 216
Query: 298 TNWGDDGYFKIKRGTNE----CGI 317
WG++GY ++KR ++ CGI
Sbjct: 217 AKWGEEGYIRMKRDISDKRGLCGI 288
>BP068646
Length = 491
Score = 57.4 bits (137), Expect = 3e-09
Identities = 31/92 (33%), Positives = 48/92 (51%), Gaps = 2/92 (2%)
Frame = -3
Query: 221 SVKAYR-VKSDPQDIMAEVYKNGPVEVAFTVF-EDFAHYKSGVYKHITGSALGGHAVKLI 278
S+K + V + + + + N P+ VA +F Y SGV+ G+ L H V +
Sbjct: 477 SLKGFEDVPAHSESALLKAVANQPISVAIDASGSEFQCYSSGVFTGSCGTELD-HGVTAV 301
Query: 279 GWGTSDEGEDYWLLANQWNTNWGDDGYFKIKR 310
G+G SD G YWL+ N W WG+ GY +++R
Sbjct: 300 GYG-SDGGTQYWLVKNSWGEQWGEQGYIRMQR 208
>TC18116 similar to UP|AAP32193 (AAP32193) Cysteine protease 14, partial
(37%)
Length = 555
Score = 54.7 bits (130), Expect = 2e-08
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Frame = +3
Query: 215 KRSKHYSVKAYR-VKSDPQDIMAEVYKNGPVEVAFTVF-EDFAHYKSGVYKHITGSALGG 272
+ S+ ++ Y V + + + + N P+ VA DF Y GV+ G+ L
Sbjct: 51 EESQVVTISGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGTQLD- 227
Query: 273 HAVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRGTNE----CGI 317
H V +G+GTS +G DY + N W T WG+ GY + +R + CG+
Sbjct: 228 HGVAAVGYGTS-KGLDYITVKNSWGTKWGEKGYIRFRRNNGKPEGMCGL 371
>TC8562 similar to UP|O24322 (O24322) Cysteine proteinase precursor ,
partial (57%)
Length = 776
Score = 54.3 bits (129), Expect = 3e-08
Identities = 47/152 (30%), Positives = 72/152 (46%), Gaps = 11/152 (7%)
Frame = +2
Query: 43 RFSNFTVGQFKR-LLGVKQAPK--KELLSTPVVTHPKSLKLPKEFDARTAWSQCSTIGKI 99
RFS+ T +F+R LG+K AP+ K+ P++ + LP +FD W + + ++
Sbjct: 332 RFSDLTPSEFRRQFLGLK-APRHLKDAQKAPILP---TNDLPTDFD----WREKGAVTEV 487
Query: 100 LGSNLILMLMMIQGHCGSCWAFGAVESLQDRFCIHFDMNISLSVNDLLAC---C----GF 152
QG CGSCW+F A +L+ + +SLS L+ C C
Sbjct: 488 KN----------QGSCGSCWSFSATGALEGAHYLATGELVSLSEQQLVDCDHECDPEDSR 637
Query: 153 LCGAGCDGGTPIYAWRY-LAHHGVVTEECDPY 183
C +GC+GG A+ Y L GV+ E+ PY
Sbjct: 638 SCDSGCNGGLMTNAFEYTLKAGGVMREKDYPY 733
>TC16185 similar to UP|O24321 (O24321) Cysteine proteinase precursor ,
partial (21%)
Length = 575
Score = 52.0 bits (123), Expect = 1e-07
Identities = 23/59 (38%), Positives = 38/59 (63%), Gaps = 5/59 (8%)
Frame = +2
Query: 277 LIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRG-----TNECGIEDDVTAGLPSTKN 330
+ G+G S+ G+D WL+ N W T+WG+DGYFK++R T +CGI + + + + +N
Sbjct: 5 VFGYG-SENGKD*WLVRNSWGTHWGEDGYFKLERNVKHTYTGKCGIAMEASYPVKNGQN 178
>TC15143 similar to UP|CYSP_PEA (P25804) Cysteine proteinase 15A precursor
(Turgor-responsive protein 15A) , partial (18%)
Length = 477
Score = 49.3 bits (116), Expect = 9e-07
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = +1
Query: 273 HAVKLIGWGTSD------EGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIEDDVT 322
H V L+G+G + + YW++ N W WG++GY++I RG + CG++ V+
Sbjct: 7 HGVLLVGYGAGAYSPLRLKEKPYWIIKNSWGETWGENGYYQICRGRHVCGVDSLVS 174
>TC12126 similar to PIR|S49166|S49166 cysteine proteinase precursor -
spring vetch {Vicia sativa;} , partial (71%)
Length = 839
Score = 48.9 bits (115), Expect = 1e-06
Identities = 25/72 (34%), Positives = 37/72 (50%)
Frame = +1
Query: 112 QGHCGSCWAFGAVESLQDRFCIHFDMNISLSVNDLLACCGFLCGAGCDGGTPIYAWRYLA 171
QG CGSCWAF A+ +++ I +SLS +L+ C GC+GG A ++
Sbjct: 451 QGQCGSCWAFSAIAAVEGINQIRTHHLVSLSEQELVD-CDVEVNEGCNGGFMAKALEFIK 627
Query: 172 HHGVVTEECDPY 183
G+ +E PY
Sbjct: 628 EKGITSESIYPY 663
>BP070099
Length = 339
Score = 47.8 bits (112), Expect = 3e-06
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -2
Query: 278 IGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKR 310
+G+G SD+G YWL+ N W WG++GY +++R
Sbjct: 335 VGYGVSDDGTKYWLVKNSWGEPWGEEGYIRMQR 237
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,171,792
Number of Sequences: 28460
Number of extensions: 119987
Number of successful extensions: 599
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of query: 345
length of database: 4,897,600
effective HSP length: 91
effective length of query: 254
effective length of database: 2,307,740
effective search space: 586165960
effective search space used: 586165960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149038.5