BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149038.3 + phase: 0
(1557 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 150 2e-36
BI418295 147 1e-35
BP033820 135 4e-32
BP066094 119 3e-28
AV779281 110 1e-24
AV769206 99 5e-21
AV777202 99 7e-21
BP075943 96 4e-20
BP041457 96 6e-20
BP030995 95 1e-19
AV764934 95 1e-19
BP084332 91 2e-18
BP057233 91 2e-18
AU088980 90 3e-18
BP030371 90 3e-18
BP066067 87 2e-17
TC12255 84 2e-16
BP063694 84 2e-16
BP073434 84 2e-16
BP070393 81 1e-15
>AV780009
Length = 529
Score = 150 bits (378), Expect = 2e-36
Identities = 80/167 (47%), Positives = 105/167 (61%), Gaps = 1/167 (0%)
Frame = -1
Query: 1367 KAVKRILRYLKGTIHHGLLINPAPMHQPLSLTAFCDADWASDPDDRRSTSGACILLGPNL 1426
+A R+LRY+KG GL + PL L A+ D+DWA PD RRS +G I LG +L
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSA---DSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSL 359
Query: 1427 ISWWAKKQTLVARSSAEAEYRSLAQASAEVLWIQSLLKELKVPTAIP-QIFCDNLSTVSL 1485
ISW KKQT V+RSS+EAEYR+LA EV W+ L + LK+ +P +FCDN S + +
Sbjct: 358 ISWRTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHI 179
Query: 1486 AHNPVLHSRTKHMELDIFFVREKVISKDLIVSHIPAQYQVADILTKP 1532
AHNP H RTKH+ELD VR K+ + + + I +Q+ADI TKP
Sbjct: 178 AHNPTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKP 38
>BI418295
Length = 523
Score = 147 bits (372), Expect = 1e-35
Identities = 69/169 (40%), Positives = 113/169 (66%)
Frame = +2
Query: 40 WKQQVEGVLRGTKMVRHVVSPQIPPVFLNDAAREAGTENPAYTEWEEQDSLLCTWILSTI 99
W+QQVEG ++ ++ +V P+IP FL + R A TENPAYT W +QDS++ TW+L+T+
Sbjct: 14 WRQQVEGAIQSHQLHDFLVDPEIPQRFLTEEDRVAATENPAYTTWIKQDSMVFTWLLTTL 193
Query: 100 SSSLLSRFVRLRFSHQVWDEIHNYCYTQMRTRSRQLRSELRTITKGTRSIAEFIARIRSI 159
S +L + S QVW EI ++ Q R +S +LRSEL+ ITKG++SI E++ RI++I
Sbjct: 194 SPFVLPTVINCERSSQVWREILDFFENQCRAQSAKLRSELKNITKGSKSITEYLRRIKTI 373
Query: 160 SESLMSIGDPVAHRDLIETVLEALPEEFNPIVATVNSQTEVISLDELES 208
+L+SIG+PV+ RD +E + + LPE+++ + + + ++ E+E+
Sbjct: 374 VNTLVSIGEPVSFRDHLEAIFDGLPEDYSALSTIIFTHASSSTISEVEA 520
>BP033820
Length = 537
Score = 135 bits (341), Expect = 4e-32
Identities = 71/158 (44%), Positives = 104/158 (64%), Gaps = 6/158 (3%)
Frame = -2
Query: 460 SPFSPNTTLTLNNLLHVPSITKNLVSVSQFCKDNNVFFEFHSNICYVKSQDSTKILLKGH 519
S F+P L LN LL VPSITKNLVSVS+F KDNNV+F FH+N C V+ QD++++LL G
Sbjct: 524 SLFNPKAILILNKLLLVPSITKNLVSVSRFAKDNNVYFTFHANFCAVRHQDTSELLLTGS 345
Query: 520 LGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCNNGSVYTP--- 576
+GDDGLY FD P +VS + +S+ SSL S + ++ P
Sbjct: 344 VGDDGLYYFDGPPSQAVSHSPVKASLFQSSLHSQPLAQAGLASQPVGNKASSAIDLPSSL 165
Query: 577 IHTSGSSN---DSSNSLSLYKVWHNRLGHPHHEVVRSV 611
+++S SS+ +SS+++S+Y++WHNR+GHPHH+V++ +
Sbjct: 164 VNSSVSSSAPCNSSSNISIYELWHNRMGHPHHDVLKQL 51
>BP066094
Length = 532
Score = 119 bits (299), Expect(2) = 3e-28
Identities = 62/148 (41%), Positives = 93/148 (61%), Gaps = 1/148 (0%)
Frame = +2
Query: 1128 KPVTVRSVLTLAVTNKWCIQQLDVNNAFLNGYLEEEVYMTQPPGFEAVDPS-LVCKLNKA 1186
K +R +++ +V + + Q++V +AFLNGY+ EEVY+ QPPG E S + KL K+
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268
Query: 1187 LYGLKQAPRAWFERLKSTLLKLGFCSSKCDPSLFILHANQHSTFMLVYVDDILITGSSAS 1246
LYGLKQAPRAW+ERL S LL+ K D +LF + +YVDDI+ ++ S
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPS 448
Query: 1247 LIQQLVKKLNAEFSLKDLGKLDYFLGIE 1274
L ++ + + AEF ++ +G+L YFLGI+
Sbjct: 449 LCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 24.3 bits (51), Expect(2) = 3e-28
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 1111 FHQMPGFDYKETFSPVVK 1128
+ Q G DY ETF+PV +
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>AV779281
Length = 505
Score = 110 bits (276), Expect = 1e-24
Identities = 54/128 (42%), Positives = 83/128 (64%)
Frame = +1
Query: 32 LDETNYLQWKQQVEGVLRGTKMVRHVVSPQIPPVFLNDAAREAGTENPAYTEWEEQDSLL 91
L++TN+L WKQ VEG++R + + P +PP FL+D R ENPAY WE+QDS L
Sbjct: 103 LEDTNFLSWKQHVEGIVRTHRWQSFLDHPDVPPRFLSDEDRVNAVENPAYQLWEQQDSAL 282
Query: 92 CTWILSTISSSLLSRFVRLRFSHQVWDEIHNYCYTQMRTRSRQLRSELRTITKGTRSIAE 151
TW+LS++S ++L V S QV + + ++ +S QLRSELR+I KG+++ ++
Sbjct: 283 FTWLLSSLSPTVLPTVVNCSQSWQVREAVLDFFKAHSFAQSTQLRSELRSIAKGSKTCSD 462
Query: 152 FIARIRSI 159
++ RI+SI
Sbjct: 463 YLKRIKSI 486
>AV769206
Length = 536
Score = 99.0 bits (245), Expect = 5e-21
Identities = 54/109 (49%), Positives = 75/109 (68%)
Frame = -3
Query: 827 FTRPYNNHKLELRSKECVFLGYSPSHKGYKCLDPTGRMFISKDVIFNEYKFPYSELFTSG 886
F RPYN+ KL L SKECVF+GYS +HKGYKCLD +GR++ISKDV+F+E++FPY LF
Sbjct: 534 FLRPYNSTKLSLHSKECVFIGYSINHKGYKCLDQSGRIYISKDVLFHEHRFPYPSLFPDE 355
Query: 887 QSSSPPTTSSDHTPLPSFLFPLNNKQCPTTQSSSTPTTTLHTASPHSSF 935
+SS TS++ PL + P+ + P +SS ++L +A+ SSF
Sbjct: 354 TTSS---TSAEFFPLST--IPIVSHTTPPALASS-GFSSLGSATLPSSF 226
>AV777202
Length = 421
Score = 98.6 bits (244), Expect = 7e-21
Identities = 46/113 (40%), Positives = 71/113 (62%)
Frame = +3
Query: 20 ASKNFKQIISVKLDETNYLQWKQQVEGVLRGTKMVRHVVSPQIPPVFLNDAAREAGTENP 79
AS + + +KLD++N+L WKQ VEG++R ++ +V P IPP FL++ R ENP
Sbjct: 78 ASSSLVHKLVLKLDDSNFLSWKQHVEGIVRTHRLQNFLVHPDIPPRFLSEEDRVNAVENP 257
Query: 80 AYTEWEEQDSLLCTWILSTISSSLLSRFVRLRFSHQVWDEIHNYCYTQMRTRS 132
AY W++QDS L TW+LS++SSS+L V S Q+W+ + ++ Q +S
Sbjct: 258 AYQVWDQQDSALFTWLLSSLSSSVLPTVVNCTQSWQIWEAVLDFFQAQSLAQS 416
>BP075943
Length = 547
Score = 95.9 bits (237), Expect = 4e-20
Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Frame = -3
Query: 1229 TFMLVYVDDILITGSSASLIQQLVKKLNAEFSLKDLGKLDYFLGIEVHYSENGSLLLSQK 1288
T +L+YVDD+L+ G+ IQ + L+ +F +KDLG+ YFLG+E+ S +G ++L+Q+
Sbjct: 527 TALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSG-IVLNQR 351
Query: 1289 KYIQDLLV-KANMANANGIASPMASSTKLTKYGSNHVSDPTFFRSIVGGLQYVTVTRPEI 1347
KY L+ + S +S L ++D +R IVG L Y+ TRP+I
Sbjct: 350 KYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDI 171
Query: 1348 SYSVNKVCQFLSAPLEDHWKAVKRILRYLKGTIHHGL 1384
+++VN++ QFLSAP + H + + L+YL G+ GL
Sbjct: 170 TFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGL 60
>BP041457
Length = 495
Score = 95.5 bits (236), Expect = 6e-20
Identities = 47/130 (36%), Positives = 74/130 (56%)
Frame = +2
Query: 24 FKQIISVKLDETNYLQWKQQVEGVLRGTKMVRHVVSPQIPPVFLNDAAREAGTENPAYTE 83
F +I KL +L WKQQVE +++ + ++V P IPP + +D G NPAY
Sbjct: 101 FSYLIFEKLSAKKFLLWKQQVEPIIKAHHLHCYIVEPAIPPRYSSDEEHANGVVNPAYPI 280
Query: 84 WEEQDSLLCTWILSTISSSLLSRFVRLRFSHQVWDEIHNYCYTQMRTRSRQLRSELRTIT 143
WE D L +W+ S +SSS+ + + S Q+W +IH++ + Q R +S Q+R+ELR+
Sbjct: 281 WETHDQFLLSWLQSLLSSSVHTCMIGCVNSFQLWVKIHSFFHNQTRAKSTQIRTELRSAK 460
Query: 144 KGTRSIAEFI 153
G R + +I
Sbjct: 461 LGGRLLHGYI 490
>BP030995
Length = 458
Score = 94.7 bits (234), Expect = 1e-19
Identities = 63/151 (41%), Positives = 89/151 (58%)
Frame = -3
Query: 463 SPNTTLTLNNLLHVPSITKNLVSVSQFCKDNNVFFEFHSNICYVKSQDSTKILLKGHLGD 522
S + L LNNLLHVP + KNL SVS FCK NNVFFEFHS+ C VKSQ++ + LL+G L
Sbjct: 441 STSFPLVLNNLLHVPGVCKNLSSVSXFCKQNNVFFEFHSDSCLVKSQETEETLLQGTL-R 265
Query: 523 DGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCNNGSVYTPIHTSGS 582
+GL FD + V+ S+S ++S L++ S+LS+ SV+ S
Sbjct: 264 NGLCAFDN-LLHKVN--LHSASTLSNSALLSSSSPASALSV--------SVF-------S 139
Query: 583 SNDSSNSLSLYKVWHNRLGHPHHEVVRSVMK 613
SN + + ++WH+RLGH ++V V+K
Sbjct: 138 SNKCAQADIDSRLWHSRLGHASQKIVSHVLK 46
>AV764934
Length = 406
Score = 94.7 bits (234), Expect = 1e-19
Identities = 56/151 (37%), Positives = 73/151 (48%)
Frame = -2
Query: 515 LLKGHLGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCNNGSVY 574
L+ G +G DGLY F P + + T S SS
Sbjct: 360 LIHGVVGPDGLYSFPLPQLQQLGYTRSMSS------------------------------ 271
Query: 575 TPIHTSGSSNDSSNSLSLYKVWHNRLGHPHHEVVRSVMKLCNQQLPNKSFTDFCSACCLG 634
+P+ SG S ++ WH+RLGHPH + ++ V+ CN K +F +ACCLG
Sbjct: 270 SPV--SGRHPSSVSAFVTLSTWHSRLGHPHLDNLKRVLSSCNVSYSPKDTVEFRTACCLG 97
Query: 635 KSHRLPSVSSKTVYNKPFELIFCDLWGPASV 665
K+HRLPS S T Y PFELI+ DLWGPA V
Sbjct: 96 KAHRLPSQMSTTTY-LPFELIYSDLWGPAPV 7
>BP084332
Length = 368
Score = 90.5 bits (223), Expect = 2e-18
Identities = 43/105 (40%), Positives = 69/105 (64%)
Frame = +2
Query: 1434 QTLVARSSAEAEYRSLAQASAEVLWIQSLLKELKVPTAIPQIFCDNLSTVSLAHNPVLHS 1493
Q+ +A S+AEAEY S A S ++LW++ L++ ++ + I+CDN + +SL+ NP+LHS
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 211
Query: 1494 RTKHMELDIFFVREKVISKDLIVSHIPAQYQVADILTKPLSASRF 1538
R KH+E+ F+R+ V L++ + +Q ADI TKPL+ RF
Sbjct: 212 RAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 346
>BP057233
Length = 473
Score = 90.5 bits (223), Expect = 2e-18
Identities = 38/75 (50%), Positives = 61/75 (80%)
Frame = -2
Query: 1473 PQIFCDNLSTVSLAHNPVLHSRTKHMELDIFFVREKVISKDLIVSHIPAQYQVADILTKP 1532
P ++CDNLS +LA NPVLH+R+KH+E+D+ ++R++V+ +++V+++P Q+AD LTKP
Sbjct: 451 PILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKP 272
Query: 1533 LSASRFLELRNKLRV 1547
LS +RF +LR+KL V
Sbjct: 271 LSHTRFSQLRDKLGV 227
>AU088980
Length = 360
Score = 89.7 bits (221), Expect = 3e-18
Identities = 45/109 (41%), Positives = 62/109 (56%)
Frame = +2
Query: 751 NGSVERKHRHIVETGLTLLANAKLPLHYWDHAFLTATYLINRLPSPILNNKSPFFLLHLQ 810
N VERKHRHI+ L+ ++ LP + W A A YLIN LPSP+L + P+ L+
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 811 IPDYKFLKSFGCSCFPFTRPYNNHKLELRSKECVFLGYSPSHKGYKCLD 859
P LK FG C+ T +N KL+ R+++CVFLG+ GY +D
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMD 328
>BP030371
Length = 516
Score = 89.7 bits (221), Expect = 3e-18
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 4/182 (2%)
Frame = -2
Query: 147 RSIAEFIARIRSISESLMSIGDPVAHRDLIETVLEALPEEFNPIVATV--NSQTEVISLD 204
R++AE++ I+SI++ SIGDPV+ ++ E +LE P ++ +V + + + + +SLD
Sbjct: 515 RTVAEYLM*IKSITDPPRSIGDPVSAKEQAEIILEGFPTKYESLVNLIHMSDKFQALSLD 336
Query: 205 ELESQLLTQEARNEKFKKALVGETASVNLT-HAENSGEKNGHNQPQTGSYPDQQFNISGN 263
E+ES L QEAR E ++K L VNLT EN G + +
Sbjct: 335 EIESLLRDQEARIECYRKFLT--EI*VNLT*TLENQGSSSANTYA--------------- 207
Query: 264 PTGNNSSQYFNPNFGGRNGSRGRGFRGNRFRGRGGRNFGRG-NIQCQICYKTGHDASICY 322
P +S++ + + NG R GG+ GRG +QCQ+C TGH AS+CY
Sbjct: 206 PAPVHSAEASHDGYSNFNGKR-----------CGGKG*GRGYGVQCQVCLPTGHTASVCY 60
Query: 323 HR 324
HR
Sbjct: 59 HR 54
>BP066067
Length = 505
Score = 87.0 bits (214), Expect = 2e-17
Identities = 42/95 (44%), Positives = 62/95 (65%)
Frame = -2
Query: 390 PAPQAYITGNESTSSNSFNNGWYPDSGATHHVTPDANNLMDAASFSGSDQMYIGNGQGLA 449
PAP A+++ + + + W DSGA+HHVT D +LM++ + G +Q+Y+ +GQGL
Sbjct: 354 PAPMAFVSNTVAAP*TT--HSW*ADSGASHHVTNDPQHLMESITMPGQEQVYVCSGQGLP 181
Query: 450 INSIGSMSFSSPFSPNTTLTLNNLLHVPSITKNLV 484
I SIG SFSSP NT +L + H+P+ITKN+V
Sbjct: 180 ILSIGFTSFSSPLISNTKFSLKDFFHLPTITKNIV 76
>TC12255
Length = 558
Score = 84.0 bits (206), Expect = 2e-16
Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 7/126 (5%)
Frame = +1
Query: 510 DSTKILLKGHLGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCN 569
D++++LL G +GDDGLY FD P +VS + +S+ SSL S
Sbjct: 181 DTSELLLTGSVGDDGLYYFDGPPSQAVSHSPVKASLFQSSLHSQPLAQAGLASQPVGNKA 360
Query: 570 NGSVYTP---IHTSGSSN---DSSNSLSLYKVWHNRLGHPHHEVVRSVMKLCNQQL-PNK 622
+ ++ P +++S SS+ +SS+++S+Y++WHNR+GHPHH+V++ + LCN + NK
Sbjct: 361 SSAIDLPSSLVNSSVSSSAPCNSSSNISIYELWHNRMGHPHHDVLKQTLSLCNVPVSSNK 540
Query: 623 SFTDFC 628
S FC
Sbjct: 541 SVFSFC 558
Score = 55.5 bits (132), Expect = 7e-08
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = +3
Query: 411 WYPDSGATHHVTPDANNLMDAASFSGSDQMYIGNGQGLAINSIGSMSFSS 460
W PDSGATHHVT + +D + DQ+ +GNGQGL I SIG + SS
Sbjct: 51 WCPDSGATHHVTNNPGIFVDNVPLATQDQLLVGNGQGLPIQSIGHL*TSS 200
>BP063694
Length = 511
Score = 83.6 bits (205), Expect = 2e-16
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 6/157 (3%)
Frame = -2
Query: 563 LSRSQCNNGSVYTPIHTSGSSNDSSNSL--SLYKVWHNRLGHPHHEVVRSVMKL----CN 616
L R +C+ G +Y S + +S+ L + +++WH+RLGH + ++++ + K +
Sbjct: 459 LGRXRCDQG-LYVLNQDSQALLTTSSPLPRASFELWHSRLGHVNFDIIKQLHKHGCLDVS 283
Query: 617 QQLPNKSFTDFCSACCLGKSHRLPSVSSKTVYNKPFELIFCDLWGPASVESHGGYSYFLI 676
LP C++C + KS RL + + +LI CDL GP+ V S G+SYF+I
Sbjct: 282 SILPKPIC---CTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASIDGFSYFVI 112
Query: 677 CVDAYSRYTWIFPLKLKSHTLITFQNFKTMVELQYNL 713
VD +SR+TW +PLK KS FK +E ++++
Sbjct: 111 FVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRFSV 1
>BP073434
Length = 490
Score = 83.6 bits (205), Expect = 2e-16
Identities = 49/140 (35%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Frame = -1
Query: 512 TKILLKGHLGDDGLYQFDQ--PYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLSRSQCN 569
T +LL GH+G DGLY F + SV R+ S V T + + N F
Sbjct: 319 TTVLLLGHVGADGLYSFPGLLASLSSVDRSPSFDIVNTITTTTTNKFL------------ 176
Query: 570 NGSVYTPIHTSGSSNDSSNSLSLYKVWHNRLGHPHHEVVRSVMKLCNQQLPNKSFTDFCS 629
+WH+RLGHPH + +++V++ CN L ++ TDFC
Sbjct: 175 -------------------------IWHSRLGHPHQDALQAVLQSCNIHLSSRDMTDFCY 71
Query: 630 ACCLGKSHRLPSVSSKTVYN 649
ACCLGKSH LPS S +VY+
Sbjct: 70 ACCLGKSHILPSSLSTSVYS 11
Score = 62.8 bits (151), Expect = 4e-10
Identities = 25/44 (56%), Positives = 32/44 (71%)
Frame = -2
Query: 411 WYPDSGATHHVTPDANNLMDAASFSGSDQMYIGNGQGLAINSIG 454
WYPDSGA+HHVTP NN+ F G D +++GNGQGL++ S G
Sbjct: 456 WYPDSGASHHVTPHGNNIQYPDPFEGPDHIFVGNGQGLSVASSG 325
>BP070393
Length = 359
Score = 80.9 bits (198), Expect = 1e-15
Identities = 44/117 (37%), Positives = 68/117 (57%)
Frame = -3
Query: 505 YVKSQDSTKILLKGHLGDDGLYQFDQPYVPSVSRTASSSSVATSSLSLNNCFSPSSLSLS 564
+ +++++K+LL+G +G DGLY FD SVS + S S ++TS+ S+ + P +
Sbjct: 303 WAMAKETSKVLLRGSVGSDGLYTFDDVNAASVSSSCSKSDLSTSTPSVLSTVYPGT---G 133
Query: 565 RSQCNNGSVYTPIHTSGSSNDSSNSLSLYKVWHNRLGHPHHEVVRSVMKLCNQQLPN 621
+SQ S+ SS S Y +WH RLGHPHHEV+++ ++LCN LPN
Sbjct: 132 KSQ-------------NMSSVSSLGNSSYDLWHCRLGHPHHEVLKTTLQLCNVPLPN 1
Score = 32.0 bits (71), Expect = 0.77
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 425 ANNLMDAASFSGSDQMYIGNGQG 447
A N D +SF+G++Q+ +GNGQG
Sbjct: 355 AGNFSDTSSFTGTEQILMGNGQG 287
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,752,426
Number of Sequences: 28460
Number of extensions: 578559
Number of successful extensions: 6760
Number of sequences better than 10.0: 493
Number of HSP's better than 10.0 without gapping: 5512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6337
length of query: 1557
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1455
effective length of database: 1,994,680
effective search space: 2902259400
effective search space used: 2902259400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC149038.3