TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148994.13 - phase: 0 
         (219 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16108 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide r...    28  1.6
TC15006 weakly similar to UP|P93333 (P93333) PR10-1 protein (Cla...    27  2.1
TC19506                                                                26  4.7
BP033273                                                               26  4.7
TC18086 similar to UP|O81023 (O81023) At2g26840 protein, partial...    26  4.7
AV773753                                                               26  4.7

>TC16108 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide
           repeat(TPR)-containing protein-like, partial (3%)
          Length = 597

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -3

Query: 65  RLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQT---ETFSSLWSEYHDDFRQFLHIYS 121
           R+ ++  E + A+ D  +V  D++      FHE     + +S LW+E+  +FR    I S
Sbjct: 220 RIQSSSEELKAAITDPVVVKVDAISG*S--FHEVVTFRDGYSQLWTEFIKEFRSMFRIAS 47

Query: 122 Q 122
           Q
Sbjct: 46  Q 44


>TC15006 weakly similar to UP|P93333 (P93333) PR10-1 protein (Class 10 PR
           protein), partial (75%)
          Length = 1047

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -1

Query: 82  LVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLA 132
           L++ +++H    +   Q ETFS+L++  H   R F  + ++    +GE L+
Sbjct: 582 LLLQNTLHTSIIIRICQKETFSNLYNPIHLGLRSFHSLLTEGGITFGEVLS 430


>TC19506 
          Length = 524

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 9/22 (40%), Positives = 10/22 (44%)
 Frame = +1

Query: 106 WSEYHDDFRQFLHIYSQDVACY 127
           W  YH     FL I+ Q   CY
Sbjct: 364 WMSYHSSLSNFLLIFQQPXICY 429


>BP033273 
          Length = 526

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +2

Query: 45 LKTVKKNKHKFYPAFIH 61
          L T+K+NK+ F+P++I+
Sbjct: 65 LATIKRNKNNFFPSYIY 115


>TC18086 similar to UP|O81023 (O81023) At2g26840 protein, partial (47%)
          Length = 954

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 79  DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACY 127
           DG   I   V P    FHEQT + S   S+ H     FLH + Q + C+
Sbjct: 1   DGIPAIQTRVPPKSVAFHEQTPSQSQSQSQTH---HHFLHSH-QGLLCF 135


>AV773753 
          Length = 204

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +1

Query: 1  MEKKITGYTTVDISQWHRK 19
          +EK I  ++TV ISQW RK
Sbjct: 67 LEKLIQQWSTVKISQWQRK 123


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,487,828
Number of Sequences: 28460
Number of extensions: 63981
Number of successful extensions: 374
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of query: 219
length of database: 4,897,600
effective HSP length: 87
effective length of query: 132
effective length of database: 2,421,580
effective search space: 319648560
effective search space used: 319648560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)