BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148971.3 - phase: 0
(226 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18028 37 0.002
AW720070 30 0.45
TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%) 28 1.3
BP082023 28 1.7
NP459568 NADH dehydrogenase ND5 [Lotus japonicus] 28 1.7
TC15608 28 1.7
TC18213 weakly similar to UP|Q9FIV2 (Q9FIV2) Similarity to pre-m... 27 2.2
TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, ... 27 2.2
TC15939 27 2.9
BP034215 27 3.8
BP082866 27 3.8
TC12276 homologue to UP|R25A_ARATH (Q9SIK2) 40S ribosomal protei... 27 3.8
AV412081 26 4.9
TC10561 26 4.9
TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported]... 26 4.9
AV779203 26 6.4
TC18226 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfer... 25 8.4
>TC18028
Length = 781
Score = 37.4 bits (85), Expect = 0.002
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 42 PFFFFQLPQQDNFYDCGLFLLYFVERFLEEAPIKFNPFKITKFSKFLNSNWFPSDE 97
P ++PQQ + +CG F+LYF+ FL AP F + + F+ +WF ++
Sbjct: 169 PLLVPKVPQQRDGNECGNFVLYFINLFLRCAP---ENFSMGGYPYFMKKDWFTFED 327
>AW720070
Length = 484
Score = 29.6 bits (65), Expect = 0.45
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Frame = -2
Query: 43 FFFFQLPQQDNFYDCGLFLLYFVERFLEEAPIK--FNPFKITKFSKFLN 89
FFFF D+F+ C F L+F FL + I+ F+ F + +F + ++
Sbjct: 195 FFFFSCCCDDSFFTCFFFFLFFFFFFLFFSAIRITFHCFFLDQFHEIID 49
>TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%)
Length = 5664
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +2
Query: 48 LPQQDNFYDCGLFLLYFVERFLEEAPIKFNPFKITKF-----SKFLNSNW 92
+PQ + F CG LL+ + L P+ ++ F++T + + +++NW
Sbjct: 80 MPQDN*FGHCGRTLLWIYDHILHRVPLIYSFFELTLWRGRDREENISNNW 229
>BP082023
Length = 485
Score = 27.7 bits (60), Expect = 1.7
Identities = 10/36 (27%), Positives = 22/36 (60%), Gaps = 4/36 (11%)
Frame = -3
Query: 47 QLPQQDNFYDCGLFLLYFVERFL----EEAPIKFNP 78
+ PQQ N DCG +++ F+++ + + P+++ P
Sbjct: 276 ECPQQTNGIDCGFYVMRFMKKLILQDQDSIPVEYFP 169
>NP459568 NADH dehydrogenase ND5 [Lotus japonicus]
Length = 2244
Score = 27.7 bits (60), Expect = 1.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 44 FFFQLPQQDNFYDCGLFLLYF 64
F+F L QQ F CGLFL++F
Sbjct: 77 FYFFLRQQKIFAVCGLFLVFF 139
>TC15608
Length = 617
Score = 27.7 bits (60), Expect = 1.7
Identities = 19/69 (27%), Positives = 34/69 (48%)
Frame = -3
Query: 103 SHIQNLIYDIFENGSLKAPPIDCRGKGPLSELPGVIEHKVEADSSGASCYPGIWHGNLSN 162
S IQ + Y+ G + PP PL E + E + AD + + C I+H ++ N
Sbjct: 387 SRIQKMNYEFL--GEPRNPP-PVAVINPLFETGFIYECNIGADQATSCCCFLIFHDHVHN 217
Query: 163 GSTETDIQF 171
+ ++++QF
Sbjct: 216 KACKSEVQF 190
>TC18213 weakly similar to UP|Q9FIV2 (Q9FIV2) Similarity to pre-mRNA
splicing factor, partial (25%)
Length = 662
Score = 27.3 bits (59), Expect = 2.2
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Frame = +1
Query: 110 YDIFENGSLKAPPIDCR----GKGPLSELPGVIEHKVEADSSGASCYPGIWHGNLSNGST 165
Y +EN + PI C GK K+ + SS S Y +H +
Sbjct: 64 YKRYENHGVSGFPIKCNFSRDGK------------KLASGSSDGSVYLYDYHSSKVVKKI 207
Query: 166 ET------DIQFRPVSPVRAASCSRDPGIV 189
+ D+ F PV P ASCS D GI+
Sbjct: 208 KAFDQACIDVSFHPVIPNVIASCSWDGGIL 297
>TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, partial
(34%)
Length = 1102
Score = 27.3 bits (59), Expect = 2.2
Identities = 16/35 (45%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Frame = -1
Query: 20 SSLQMNLTNSV---ELFIDFCFSLPPFFFFQLPQQ 51
S L M + +SV LF+ F LPP FF PQQ
Sbjct: 112 SILNMGMVDSVLLTALFLSMYFLLPPLPFFLEPQQ 8
>TC15939
Length = 841
Score = 26.9 bits (58), Expect = 2.9
Identities = 17/65 (26%), Positives = 28/65 (42%)
Frame = +2
Query: 49 PQQDNFYDCGLFLLYFVERFLEEAPIKFNPFKITKFSKFLNSNWFPSDEASLRRSHIQNL 108
P Q N DCG Y+V R++ + P + K + L+ N+F D+ R +
Sbjct: 260 PHQMNDVDCG----YYVLRYMRSLILYELPHPVDKDAYDLSCNFFSQDQVDEIREEWSSY 427
Query: 109 IYDIF 113
+ F
Sbjct: 428 VLQNF 442
>BP034215
Length = 524
Score = 26.6 bits (57), Expect = 3.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 44 FFFQLPQQDNFYDCGLFLLYFVERFLEEAPI 74
F + P+Q N DCG +++ F++ + P+
Sbjct: 341 FAVKCPRQTNSVDCGYYVMKFMKDIITHPPL 249
>BP082866
Length = 470
Score = 26.6 bits (57), Expect = 3.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 148 GASCYPGIWHGNLSNGST 165
G C P WH SNGST
Sbjct: 332 GGKCKPRFWHKEESNGST 385
>TC12276 homologue to UP|R25A_ARATH (Q9SIK2) 40S ribosomal protein S25-1,
complete
Length = 551
Score = 26.6 bits (57), Expect = 3.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 32 LFIDFCFSLPPFFFFQLPQQD 52
L FCF L FFFF LP D
Sbjct: 153 LTFSFCFPLLHFFFFCLPPPD 91
>AV412081
Length = 340
Score = 26.2 bits (56), Expect = 4.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 108 LIYDIFENGSLKAPPIDCRGKGPLSELPGVIEHKVEADSSGASCY----PGIWHGNL 160
L+YD F NGSL + + G L K+ D + Y PG+ HGNL
Sbjct: 166 LVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGLTHGNL 336
>TC10561
Length = 622
Score = 26.2 bits (56), Expect = 4.9
Identities = 9/35 (25%), Positives = 20/35 (56%)
Frame = -2
Query: 62 LYFVERFLEEAPIKFNPFKITKFSKFLNSNWFPSD 96
++F F++ +K+NP + +K++ N+F D
Sbjct: 510 MFFYSTFIQSKKMKYNPHACGQGTKYMFGNYFRID 406
>TC14527 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(42%)
Length = 1095
Score = 26.2 bits (56), Expect = 4.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 32 LFIDFCFSLPPFFFFQLPQQDNFYDCGLF 60
+F+ F F F+F +L DN Y CG+F
Sbjct: 1008 VFLLFTFYNITFYFSELMFVDNVYICGVF 1094
>AV779203
Length = 487
Score = 25.8 bits (55), Expect = 6.4
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -2
Query: 32 LFIDFCFSLPPFFFF 46
LFI FCF+L PF +F
Sbjct: 57 LFI*FCFALSPFSYF 13
>TC18226 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (19%)
Length = 426
Score = 25.4 bits (54), Expect = 8.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 122 PIDCRGKGPLSELPGVIEHKVEADSSGASCYPG 154
P+ C G L L GV++ GASCY G
Sbjct: 107 PLGCSGARILVTLLGVLKRNHGKYGVGASCYGG 205
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,487,104
Number of Sequences: 28460
Number of extensions: 68680
Number of successful extensions: 493
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of query: 226
length of database: 4,897,600
effective HSP length: 87
effective length of query: 139
effective length of database: 2,421,580
effective search space: 336599620
effective search space used: 336599620
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148971.3