BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148970.11 + phase: 0
(382 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8006 similar to UP|Q9LVE9 (Q9LVE9) Genomic DNA, chromosome 3, ... 28 0.29
TC11995 30 0.87
TC17789 similar to PIR|T05768|T05768 subtilisin-like proteinase ... 28 2.5
TC17762 28 3.3
TC14332 similar to UP|SUCB_ARATH (O82662) Succinyl-CoA ligase [G... 28 3.3
TC19379 homologue to UP|Q945P0 (Q945P0) Transcriptional activato... 28 3.3
AV421981 27 5.7
TC20036 similar to UP|Q9LLM5 (Q9LLM5) Outward-rectifying potassi... 27 5.7
TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Ara... 27 7.4
TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine b... 27 7.4
TC15567 similar to UP|IF37_ARATH (P56820) Eukaryotic translation... 26 9.7
TC14821 homologue to UP|AAR12195 (AAR12195) Molecular chaperone ... 26 9.7
>TC8006 similar to UP|Q9LVE9 (Q9LVE9) Genomic DNA, chromosome 3, P1 clone:
MIL23, partial (27%)
Length = 1225
Score = 28.5 bits (62), Expect(2) = 0.29
Identities = 19/67 (28%), Positives = 27/67 (39%)
Frame = -1
Query: 312 YEARNSPDTYDMVSGAVAYADAQLGQEEVMSMTPQQSFEAITHMREQIAPILTRRRAQRP 371
Y R D YD + + Q E P+ +H R + P RR+ +RP
Sbjct: 745 YRLREGKDGYDPIQNPGSLTRPGSFQPEQAPQIPRGGV-VNSHRRRNLLP--KRRQRKRP 575
Query: 372 RRRHHHQ 378
RRR H +
Sbjct: 574 RRRRHRK 554
Score = 21.2 bits (43), Expect(2) = 0.29
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = -3
Query: 285 PQILPPIP 292
PQ+LPPIP
Sbjct: 863 PQLLPPIP 840
>TC11995
Length = 726
Score = 29.6 bits (65), Expect = 0.87
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 70 RDFYTSYLGRANVLAGTEDPEEVEELERVRTYCVRCYLLYLVRCLLFGDRSNKRIELIYL 129
R F T+YLGR V+ T + ++ EE+ + + +R + + R GD S K + + L
Sbjct: 298 RSFQTNYLGRLTVIHNTLEGKKKEEILFCQVFVLRVFYFLVYR---NGDISRKEMTPLIL 468
>TC17789 similar to PIR|T05768|T05768 subtilisin-like proteinase -
Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (14%)
Length = 940
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 356 REQIAPILTRRRAQRPRRRHHHQ 378
R I P+L R R +PRR H H+
Sbjct: 553 RHHITPLLHRLREHKPRRLHRHR 485
>TC17762
Length = 463
Score = 27.7 bits (60), Expect = 3.3
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = +2
Query: 342 SMTPQQSFEAITHMREQIAPILTRRRAQRPRRRHHHQ 378
SM+P + A +++P + + + P R HHHQ
Sbjct: 152 SMSPSREHAATMGNNRRLSPFVLSGQPRAPSRLHHHQ 262
>TC14332 similar to UP|SUCB_ARATH (O82662) Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (Succinyl-CoA
synthetase, beta chain) (SCS-beta) , complete
Length = 1773
Score = 27.7 bits (60), Expect = 3.3
Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = +3
Query: 21 IEGRMLDHGKKMPKHEGAALLMTY-LGVAQHEAEKICNQEYGGYISYPRLRDFY 73
+EG +D GK++ K G L+ L A H+A K N+ + P+L ++
Sbjct: 1275 LEGTNVDQGKRILKESGMTLITAEDLDDAAHKAVKAINK*RVTSVQIPKLHHYF 1436
>TC19379 homologue to UP|Q945P0 (Q945P0) Transcriptional activator FHA1,
partial (56%)
Length = 525
Score = 27.7 bits (60), Expect = 3.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 356 REQIAPILTRRRAQRPRRRHHH 377
R Q+ I RRR +PRRRH H
Sbjct: 125 RPQLQEIHRRRRPLQPRRRHEH 190
>AV421981
Length = 468
Score = 26.9 bits (58), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 229 PRHPTDVRDLPPPSIVQMFVD 249
P HPT +R LPPP+I V+
Sbjct: 129 PLHPTLLRHLPPPTISTSLVE 191
>TC20036 similar to UP|Q9LLM5 (Q9LLM5) Outward-rectifying potassium channel
KCO1, partial (34%)
Length = 470
Score = 26.9 bits (58), Expect = 5.7
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = -1
Query: 360 APILTRRRAQRPRRRHHHQDQ 380
+P R + Q+P++ HHHQDQ
Sbjct: 245 SPSTYR*QIQQPQQSHHHQDQ 183
>TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;}, partial (25%)
Length = 856
Score = 26.6 bits (57), Expect = 7.4
Identities = 14/26 (53%), Positives = 16/26 (60%)
Frame = +3
Query: 353 THMREQIAPILTRRRAQRPRRRHHHQ 378
TH R+ +L RRR Q PRRR HQ
Sbjct: 192 THPRQPA--LLRRRRHQDPRRRPEHQ 263
>TC8946 homologue to GB|AAM66972.1|21617922|AY088650 pyridoxine
biosynthesis protein-like {Arabidopsis thaliana;} ,
partial (45%)
Length = 503
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 356 REQIAPIL--TRRRAQRPRRRHHHQDQ 380
R+Q P+L +R R+ PRRRHH + Q
Sbjct: 132 RDQEIPLLRQSRPRSDAPRRRHHGRRQ 212
>TC15567 similar to UP|IF37_ARATH (P56820) Eukaryotic translation initiation
factor 3 subunit 7 (eIF-3 zeta) (eIF3d) (p66), partial
(24%)
Length = 820
Score = 26.2 bits (56), Expect = 9.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 166 VLGGSVTLLTLDDVCWR 182
++GGS +L T+ +CWR
Sbjct: 451 IIGGSSSLFTISTLCWR 401
>TC14821 homologue to UP|AAR12195 (AAR12195) Molecular chaperone Hsp90-1,
partial (29%)
Length = 612
Score = 26.2 bits (56), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 284 HPQILPPIPGDLLRPANEEQIIAEQW 309
HPQ+ PP P L RP +++ QW
Sbjct: 123 HPQLCPPRPSSLPRPHHQKS--PSQW 52
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,232,828
Number of Sequences: 28460
Number of extensions: 103061
Number of successful extensions: 619
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of query: 382
length of database: 4,897,600
effective HSP length: 92
effective length of query: 290
effective length of database: 2,279,280
effective search space: 660991200
effective search space used: 660991200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC148970.11