
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148965.10 + phase: 0
(636 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12893 similar to GB|AAP37728.1|30725412|BT008369 At3g03720 {Ar... 341 2e-94
AV766986 192 1e-49
TC18277 weakly similar to UP|Q9FIV7 (Q9FIV7) Cationic amino acid... 159 2e-39
AW720091 136 9e-33
AV409908 112 1e-25
TC19724 similar to UP|Q9ASS7 (Q9ASS7) AT5g36940/MLF18_60, partia... 76 1e-14
AV779445 30 0.91
TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding... 29 2.0
TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase car... 28 5.9
TC11273 28 5.9
BP037078 28 5.9
TC10639 similar to UP|Q84VW5 (Q84VW5) At1g11760, partial (15%) 27 7.7
TC16487 similar to UP|Q9LT09 (Q9LT09) 50S ribosomal protein L24,... 27 7.7
AV409831 27 7.7
>TC12893 similar to GB|AAP37728.1|30725412|BT008369 At3g03720 {Arabidopsis
thaliana;}, partial (30%)
Length = 564
Score = 341 bits (875), Expect = 2e-94
Identities = 171/187 (91%), Positives = 177/187 (94%)
Frame = +3
Query: 25 KQVDSIHYRGHPQLARKLSVVDLVGIGVGATIGAGVYILIGTVAREQAGPALVISLFIAG 84
KQVDS+H RGH QLARKLS VDLVGIGVGATIGAGVYILIGTVAREQAGPALVISL IAG
Sbjct: 3 KQVDSVHVRGHAQLARKLSAVDLVGIGVGATIGAGVYILIGTVAREQAGPALVISLLIAG 182
Query: 85 IAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITP 144
IAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITP
Sbjct: 183 IAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITP 362
Query: 145 NLALFFGGQDNLPSFLARHTLPGLGIVVDPCAAVLIVLITLLLCLGIKESSTVQSIVTTI 204
NLALFFGGQ+NLP FLARHTLPGLGIVVDPCAA LI+ +TLLLCLGIKES+ QSIVTT+
Sbjct: 363 NLALFFGGQENLPVFLARHTLPGLGIVVDPCAAALILFVTLLLCLGIKESAMAQSIVTTV 542
Query: 205 NVSVMLF 211
NV VMLF
Sbjct: 543 NVIVMLF 563
>AV766986
Length = 541
Score = 192 bits (488), Expect = 1e-49
Identities = 92/100 (92%), Positives = 95/100 (95%)
Frame = -2
Query: 537 LCSIIVLACIKQDDTRHTFGHSGGFACPFVPFLPAACILINTYLLIDLGVDTWLRVSVWL 596
LCS+IVLAC +QDDTRH+FGHSGGFACP VPFLPAACILINTYLLIDLG TWLRVSVWL
Sbjct: 540 LCSLIVLACTEQDDTRHSFGHSGGFACPCVPFLPAACILINTYLLIDLGAATWLRVSVWL 361
Query: 597 LIGVLIYLFYGRTHSSLLNAIYVPSARADEIHRSQANHLA 636
LIGVLIYLFYGRTHSSLLNAIYVPSA ADEIHRSQANHLA
Sbjct: 360 LIGVLIYLFYGRTHSSLLNAIYVPSAYADEIHRSQANHLA 241
>TC18277 weakly similar to UP|Q9FIV7 (Q9FIV7) Cationic amino acid
transporter-like protein, partial (19%)
Length = 557
Score = 159 bits (401), Expect = 2e-39
Identities = 86/188 (45%), Positives = 116/188 (60%), Gaps = 1/188 (0%)
Frame = +2
Query: 379 TGLFAAVLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEIPIPASLLTSVDPL 438
TGL AAVLAF M+VS+LAGMVSVGTLLAFTTVA+SVLI+RY+PPD +P+P SL ++
Sbjct: 5 TGLGAAVLAFTMEVSELAGMVSVGTLLAFTTVAISVLILRYIPPDVVPLPPSLQEPIEYS 184
Query: 439 LRHSGDDIEEDRTVSPVDLASYSDNSHLHDKSDVLLEHPLIIKEVTKEQH-NEKTRRKLA 497
HS E + + + A+ + L K DV +++P K + E + + RRK
Sbjct: 185 WSHS----ETNEKDTEANGATSGNKKPLLVKEDVTIDYPFNCKYLAVENYIHNGNRRKFI 352
Query: 498 AWTIALLCIGILIVSGSASAERCPRILRVTLFGAGVVIFLCSIIVLACIKQDDTRHTFGH 557
W IA C+G+ +++ +AS LR L G G + L + L C++QDD RH FGH
Sbjct: 353 GWVIAFTCLGVFVLTFAASNITLLSSLRFALCGIGGTLLLSGFVFLTCMEQDDARHNFGH 532
Query: 558 SGGFACPF 565
SGGF CPF
Sbjct: 533 SGGFICPF 556
>AW720091
Length = 492
Score = 136 bits (343), Expect = 9e-33
Identities = 68/99 (68%), Positives = 81/99 (81%), Gaps = 3/99 (3%)
Frame = +3
Query: 23 RRKQVDSIHYRGHP---QLARKLSVVDLVGIGVGATIGAGVYILIGTVAREQAGPALVIS 79
RRK+VDS + QLA++L+V L+ IGVGAT+GAGVY+L+GTVARE AGPAL +S
Sbjct: 195 RRKKVDSAGTTSNDSENQLAKELTVPHLMAIGVGATVGAGVYVLVGTVAREHAGPALPLS 374
Query: 80 LFIAGIAAALSALCYAELACRCPSAGSAYHYTYICIGEG 118
+AG AAALSALCYAELA RCPSAGSAYHY+YIC+GEG
Sbjct: 375 FLVAGFAAALSALCYAELASRCPSAGSAYHYSYICVGEG 491
>AV409908
Length = 427
Score = 112 bits (281), Expect = 1e-25
Identities = 59/143 (41%), Positives = 94/143 (65%), Gaps = 8/143 (5%)
Frame = +1
Query: 192 KESSTVQSIVTTINVSVMLFIIIVGGYLGFKAGWVGY------ELPSGYFPYGVNGMFAG 245
+ESS V I+T +++ + F+I++G G W + E PSG+FPYG G+F G
Sbjct: 1 RESSVVNMILTALHILFIAFVIVIGFCRG---SWKNFTEPAHRENPSGFFPYGAAGVFKG 171
Query: 246 SAIVFFSYIGFDSVTSTAEEVKNPQRDLPIGISTALAICCVLYMLVSAVIVGLVPYYELN 305
+A V+ SYIG+D+V++ AEEV++P +D+PIG+S ++AI VLY L++A + L+PY ++
Sbjct: 172 AAAVYMSYIGYDAVSTMAEEVRDPVKDIPIGVSGSVAIVTVLYCLMAASMSKLLPYDLID 351
Query: 306 PDTPISSAFS--SYGMEWAVYII 326
+ P S+AF+ S G WA +I
Sbjct: 352 AEAPFSAAFNGRSDGWGWASRVI 420
>TC19724 similar to UP|Q9ASS7 (Q9ASS7) AT5g36940/MLF18_60, partial (8%)
Length = 428
Score = 76.3 bits (186), Expect = 1e-14
Identities = 47/144 (32%), Positives = 78/144 (53%), Gaps = 3/144 (2%)
Frame = +3
Query: 405 LAFTTVAVSVLIIRYVPPDEIPIPASLLTSVDPLLRHSGDDIEEDRTVSPVDLASYSDNS 464
LAFT VA+ VLI+RY+PP+E+P+P S+ S+ + E AS S++S
Sbjct: 3 LAFTIVAICVLILRYIPPNEVPLPPSIQDSITSVSTGYSLSSAESNVEYAEAYASISEDS 182
Query: 465 H-LHDKSDVLLEHPLIIKEVTKEQH-NEKTRRKLAAWTIALLCIGILIVSGSASAERCPR 522
L K DV + +PLI K + + N+ RR++ W+I +C+G +++ + S P
Sbjct: 183 KPLVVKEDVSIRYPLIAKHLGIGYYLNDGNRRRVVGWSITFICLGAFVLTYATS--YIPL 356
Query: 523 I-LRVTLFGAGVVIFLCSIIVLAC 545
I +R L G G ++ + ++ L C
Sbjct: 357 IFVRFVLCGVGGILLVSGLVFLTC 428
>AV779445
Length = 581
Score = 30.4 bits (67), Expect = 0.91
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 280 ALAICCVLYMLVSAVIVGLVPYYELN 305
AL ICC Y+LV A++VG+ P L+
Sbjct: 225 ALLICCPAYVLVLAIVVGM*PLCHLS 148
>TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
cnd41-like protein, partial (33%)
Length = 716
Score = 29.3 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 250 FFSYIGFDSVTSTAEEVKNPQRDLPIGISTALAICCVLYMLVSAVIVG 297
F+SY + S +NP R+L I T + CC M+ S +VG
Sbjct: 554 FYSYRSTSTTHS*QLWAENPTRELAISKPTRVPCCCTFPMIDSDDVVG 411
>TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta (ACCASE beta chain) , complete
Length = 1514
Score = 27.7 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +3
Query: 310 ISSAFSSYGMEWAVYII------TTGAVTALFSSLLGSVLPQPRVFMAMA 353
ISSA Y + ++ + TTG VTA F L ++ +P ++A A
Sbjct: 1173 ISSALYDYQLNKKLFYVSILTSPTTGGVTASFGMLGDIIIAEPNAYIAFA 1322
>TC11273
Length = 585
Score = 27.7 bits (60), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 472 VLLEHPLIIKEVTKEQHNE 490
+LL HP+II +T+ QH +
Sbjct: 528 ILLHHPIIISSITRNQHRK 584
>BP037078
Length = 529
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = -1
Query: 463 NSHLHDKSDVLLEHPLIIKEVTKEQHNEKTRRKLAAWTIAL--LCIGILIVSGSASA-ER 519
+ H+H+ EHP+ + V K+ H+ + +R ++I L + + +L++ S+SA E
Sbjct: 379 HQHVHEPFPPPPEHPMTLFSVEKQPHSARIQR----YSIYLE*ISLFLLLLHPSSSALET 212
Query: 520 CP 521
CP
Sbjct: 211 CP 206
>TC10639 similar to UP|Q84VW5 (Q84VW5) At1g11760, partial (15%)
Length = 647
Score = 27.3 bits (59), Expect = 7.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 97 LACRCPSAGSAYHYTYICI 115
L C CPS+ S H+T +C+
Sbjct: 277 LTCYCPSSWSLCHFTSLCV 333
>TC16487 similar to UP|Q9LT09 (Q9LT09) 50S ribosomal protein L24, complete
Length = 934
Score = 27.3 bits (59), Expect = 7.7
Identities = 17/59 (28%), Positives = 25/59 (41%)
Frame = -3
Query: 553 HTFGHSGGFACPFVPFLPAACILINTYLLIDLGVDTWLRVSVWLLIGVLIYLFYGRTHS 611
H G + GF C PF+ + + Y + L DT LR + L L +F H+
Sbjct: 407 HIGGMNWGFNCKDAPFMTLPLLDMLLYQIFTLNNDTILRANDTLNKASLTLIFASYNHN 231
>AV409831
Length = 420
Score = 27.3 bits (59), Expect = 7.7
Identities = 14/55 (25%), Positives = 26/55 (46%)
Frame = -2
Query: 379 TGLFAAVLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEIPIPASLLT 433
+G F +L + + M+ + ++ TT+ L++ PP+ P P SL T
Sbjct: 299 SGNFCFLL*YLTPTKSMPQMI-INVIITMTTITAVCLLLLPPPPEPAPTPPSLET 138
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,447,217
Number of Sequences: 28460
Number of extensions: 174814
Number of successful extensions: 1160
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of query: 636
length of database: 4,897,600
effective HSP length: 96
effective length of query: 540
effective length of database: 2,165,440
effective search space: 1169337600
effective search space used: 1169337600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC148965.10