Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148965.10 + phase: 0 
         (636 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12893 similar to GB|AAP37728.1|30725412|BT008369 At3g03720 {Ar...   341  2e-94
AV766986                                                              192  1e-49
TC18277 weakly similar to UP|Q9FIV7 (Q9FIV7) Cationic amino acid...   159  2e-39
AW720091                                                              136  9e-33
AV409908                                                              112  1e-25
TC19724 similar to UP|Q9ASS7 (Q9ASS7) AT5g36940/MLF18_60, partia...    76  1e-14
AV779445                                                               30  0.91
TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding...    29  2.0
TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase car...    28  5.9
TC11273                                                                28  5.9
BP037078                                                               28  5.9
TC10639 similar to UP|Q84VW5 (Q84VW5) At1g11760, partial (15%)         27  7.7
TC16487 similar to UP|Q9LT09 (Q9LT09) 50S ribosomal protein L24,...    27  7.7
AV409831                                                               27  7.7

>TC12893 similar to GB|AAP37728.1|30725412|BT008369 At3g03720 {Arabidopsis
           thaliana;}, partial (30%)
          Length = 564

 Score =  341 bits (875), Expect = 2e-94
 Identities = 171/187 (91%), Positives = 177/187 (94%)
 Frame = +3

Query: 25  KQVDSIHYRGHPQLARKLSVVDLVGIGVGATIGAGVYILIGTVAREQAGPALVISLFIAG 84
           KQVDS+H RGH QLARKLS VDLVGIGVGATIGAGVYILIGTVAREQAGPALVISL IAG
Sbjct: 3   KQVDSVHVRGHAQLARKLSAVDLVGIGVGATIGAGVYILIGTVAREQAGPALVISLLIAG 182

Query: 85  IAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITP 144
           IAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITP
Sbjct: 183 IAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITP 362

Query: 145 NLALFFGGQDNLPSFLARHTLPGLGIVVDPCAAVLIVLITLLLCLGIKESSTVQSIVTTI 204
           NLALFFGGQ+NLP FLARHTLPGLGIVVDPCAA LI+ +TLLLCLGIKES+  QSIVTT+
Sbjct: 363 NLALFFGGQENLPVFLARHTLPGLGIVVDPCAAALILFVTLLLCLGIKESAMAQSIVTTV 542

Query: 205 NVSVMLF 211
           NV VMLF
Sbjct: 543 NVIVMLF 563


>AV766986 
          Length = 541

 Score =  192 bits (488), Expect = 1e-49
 Identities = 92/100 (92%), Positives = 95/100 (95%)
 Frame = -2

Query: 537 LCSIIVLACIKQDDTRHTFGHSGGFACPFVPFLPAACILINTYLLIDLGVDTWLRVSVWL 596
           LCS+IVLAC +QDDTRH+FGHSGGFACP VPFLPAACILINTYLLIDLG  TWLRVSVWL
Sbjct: 540 LCSLIVLACTEQDDTRHSFGHSGGFACPCVPFLPAACILINTYLLIDLGAATWLRVSVWL 361

Query: 597 LIGVLIYLFYGRTHSSLLNAIYVPSARADEIHRSQANHLA 636
           LIGVLIYLFYGRTHSSLLNAIYVPSA ADEIHRSQANHLA
Sbjct: 360 LIGVLIYLFYGRTHSSLLNAIYVPSAYADEIHRSQANHLA 241


>TC18277 weakly similar to UP|Q9FIV7 (Q9FIV7) Cationic amino acid
           transporter-like protein, partial (19%)
          Length = 557

 Score =  159 bits (401), Expect = 2e-39
 Identities = 86/188 (45%), Positives = 116/188 (60%), Gaps = 1/188 (0%)
 Frame = +2

Query: 379 TGLFAAVLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEIPIPASLLTSVDPL 438
           TGL AAVLAF M+VS+LAGMVSVGTLLAFTTVA+SVLI+RY+PPD +P+P SL   ++  
Sbjct: 5   TGLGAAVLAFTMEVSELAGMVSVGTLLAFTTVAISVLILRYIPPDVVPLPPSLQEPIEYS 184

Query: 439 LRHSGDDIEEDRTVSPVDLASYSDNSHLHDKSDVLLEHPLIIKEVTKEQH-NEKTRRKLA 497
             HS    E +   +  + A+  +   L  K DV +++P   K +  E + +   RRK  
Sbjct: 185 WSHS----ETNEKDTEANGATSGNKKPLLVKEDVTIDYPFNCKYLAVENYIHNGNRRKFI 352

Query: 498 AWTIALLCIGILIVSGSASAERCPRILRVTLFGAGVVIFLCSIIVLACIKQDDTRHTFGH 557
            W IA  C+G+ +++ +AS       LR  L G G  + L   + L C++QDD RH FGH
Sbjct: 353 GWVIAFTCLGVFVLTFAASNITLLSSLRFALCGIGGTLLLSGFVFLTCMEQDDARHNFGH 532

Query: 558 SGGFACPF 565
           SGGF CPF
Sbjct: 533 SGGFICPF 556


>AW720091 
          Length = 492

 Score =  136 bits (343), Expect = 9e-33
 Identities = 68/99 (68%), Positives = 81/99 (81%), Gaps = 3/99 (3%)
 Frame = +3

Query: 23  RRKQVDSIHYRGHP---QLARKLSVVDLVGIGVGATIGAGVYILIGTVAREQAGPALVIS 79
           RRK+VDS     +    QLA++L+V  L+ IGVGAT+GAGVY+L+GTVARE AGPAL +S
Sbjct: 195 RRKKVDSAGTTSNDSENQLAKELTVPHLMAIGVGATVGAGVYVLVGTVAREHAGPALPLS 374

Query: 80  LFIAGIAAALSALCYAELACRCPSAGSAYHYTYICIGEG 118
             +AG AAALSALCYAELA RCPSAGSAYHY+YIC+GEG
Sbjct: 375 FLVAGFAAALSALCYAELASRCPSAGSAYHYSYICVGEG 491


>AV409908 
          Length = 427

 Score =  112 bits (281), Expect = 1e-25
 Identities = 59/143 (41%), Positives = 94/143 (65%), Gaps = 8/143 (5%)
 Frame = +1

Query: 192 KESSTVQSIVTTINVSVMLFIIIVGGYLGFKAGWVGY------ELPSGYFPYGVNGMFAG 245
           +ESS V  I+T +++  + F+I++G   G    W  +      E PSG+FPYG  G+F G
Sbjct: 1   RESSVVNMILTALHILFIAFVIVIGFCRG---SWKNFTEPAHRENPSGFFPYGAAGVFKG 171

Query: 246 SAIVFFSYIGFDSVTSTAEEVKNPQRDLPIGISTALAICCVLYMLVSAVIVGLVPYYELN 305
           +A V+ SYIG+D+V++ AEEV++P +D+PIG+S ++AI  VLY L++A +  L+PY  ++
Sbjct: 172 AAAVYMSYIGYDAVSTMAEEVRDPVKDIPIGVSGSVAIVTVLYCLMAASMSKLLPYDLID 351

Query: 306 PDTPISSAFS--SYGMEWAVYII 326
            + P S+AF+  S G  WA  +I
Sbjct: 352 AEAPFSAAFNGRSDGWGWASRVI 420


>TC19724 similar to UP|Q9ASS7 (Q9ASS7) AT5g36940/MLF18_60, partial (8%)
          Length = 428

 Score = 76.3 bits (186), Expect = 1e-14
 Identities = 47/144 (32%), Positives = 78/144 (53%), Gaps = 3/144 (2%)
 Frame = +3

Query: 405 LAFTTVAVSVLIIRYVPPDEIPIPASLLTSVDPLLRHSGDDIEEDRTVSPVDLASYSDNS 464
           LAFT VA+ VLI+RY+PP+E+P+P S+  S+  +         E         AS S++S
Sbjct: 3   LAFTIVAICVLILRYIPPNEVPLPPSIQDSITSVSTGYSLSSAESNVEYAEAYASISEDS 182

Query: 465 H-LHDKSDVLLEHPLIIKEVTKEQH-NEKTRRKLAAWTIALLCIGILIVSGSASAERCPR 522
             L  K DV + +PLI K +    + N+  RR++  W+I  +C+G  +++ + S    P 
Sbjct: 183 KPLVVKEDVSIRYPLIAKHLGIGYYLNDGNRRRVVGWSITFICLGAFVLTYATS--YIPL 356

Query: 523 I-LRVTLFGAGVVIFLCSIIVLAC 545
           I +R  L G G ++ +  ++ L C
Sbjct: 357 IFVRFVLCGVGGILLVSGLVFLTC 428


>AV779445 
          Length = 581

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 280 ALAICCVLYMLVSAVIVGLVPYYELN 305
           AL ICC  Y+LV A++VG+ P   L+
Sbjct: 225 ALLICCPAYVLVLAIVVGM*PLCHLS 148


>TC9480 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
           cnd41-like protein, partial (33%)
          Length = 716

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 250 FFSYIGFDSVTSTAEEVKNPQRDLPIGISTALAICCVLYMLVSAVIVG 297
           F+SY    +  S     +NP R+L I   T +  CC   M+ S  +VG
Sbjct: 554 FYSYRSTSTTHS*QLWAENPTRELAISKPTRVPCCCTFPMIDSDDVVG 411


>TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase carboxyl
            transferase subunit beta  (ACCASE beta chain) , complete
          Length = 1514

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +3

Query: 310  ISSAFSSYGMEWAVYII------TTGAVTALFSSLLGSVLPQPRVFMAMA 353
            ISSA   Y +   ++ +      TTG VTA F  L   ++ +P  ++A A
Sbjct: 1173 ISSALYDYQLNKKLFYVSILTSPTTGGVTASFGMLGDIIIAEPNAYIAFA 1322


>TC11273 
          Length = 585

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 472 VLLEHPLIIKEVTKEQHNE 490
           +LL HP+II  +T+ QH +
Sbjct: 528 ILLHHPIIISSITRNQHRK 584


>BP037078 
          Length = 529

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = -1

Query: 463 NSHLHDKSDVLLEHPLIIKEVTKEQHNEKTRRKLAAWTIAL--LCIGILIVSGSASA-ER 519
           + H+H+      EHP+ +  V K+ H+ + +R    ++I L  + + +L++  S+SA E 
Sbjct: 379 HQHVHEPFPPPPEHPMTLFSVEKQPHSARIQR----YSIYLE*ISLFLLLLHPSSSALET 212

Query: 520 CP 521
           CP
Sbjct: 211 CP 206


>TC10639 similar to UP|Q84VW5 (Q84VW5) At1g11760, partial (15%)
          Length = 647

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 97  LACRCPSAGSAYHYTYICI 115
           L C CPS+ S  H+T +C+
Sbjct: 277 LTCYCPSSWSLCHFTSLCV 333


>TC16487 similar to UP|Q9LT09 (Q9LT09) 50S ribosomal protein L24, complete
          Length = 934

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 17/59 (28%), Positives = 25/59 (41%)
 Frame = -3

Query: 553 HTFGHSGGFACPFVPFLPAACILINTYLLIDLGVDTWLRVSVWLLIGVLIYLFYGRTHS 611
           H  G + GF C   PF+    + +  Y +  L  DT LR +  L    L  +F    H+
Sbjct: 407 HIGGMNWGFNCKDAPFMTLPLLDMLLYQIFTLNNDTILRANDTLNKASLTLIFASYNHN 231


>AV409831 
          Length = 420

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 14/55 (25%), Positives = 26/55 (46%)
 Frame = -2

Query: 379 TGLFAAVLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEIPIPASLLT 433
           +G F  +L +      +  M+ +  ++  TT+    L++   PP+  P P SL T
Sbjct: 299 SGNFCFLL*YLTPTKSMPQMI-INVIITMTTITAVCLLLLPPPPEPAPTPPSLET 138


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,447,217
Number of Sequences: 28460
Number of extensions: 174814
Number of successful extensions: 1160
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of query: 636
length of database: 4,897,600
effective HSP length: 96
effective length of query: 540
effective length of database: 2,165,440
effective search space: 1169337600
effective search space used: 1169337600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)


Medicago: description of AC148965.10