TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148819.5 - phase: 0 
         (83 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7931 weakly similar to UP|Q43640 (Q43640) Dioxygenase, partial...    23  7.3
AV420870                                                               23  7.3
AV777511                                                               23  9.6

>TC7931 weakly similar to UP|Q43640 (Q43640) Dioxygenase, partial (29%)
          Length = 1477

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = -1

Query: 53   KMADNARSFFVLCLRDKVLREVV 75
            K A + R FF  CLRDK++R ++
Sbjct: 1075 KFA*DFRKFFS-CLRDKIIRPIL 1010


>AV420870 
          Length = 264

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
 Frame = +3

Query: 42  FSDTMSQEDKTKMADNARSFFV-LCLRDKVLREVVKDTTI 80
           FS   SQ+    MAD+ RSF +   L  K     ++D+ +
Sbjct: 96  FSPPESQQQSPSMADDERSFRIGYALAPKKRNSFIRDSLV 215


>AV777511 
          Length = 394

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 35 ARKGKILFSDTMSQEDKTKMADNARSFFVLCLR 67
          A KGKI+  +  S   K K+A        LC++
Sbjct: 66 AYKGKIILQEARSFHIKKKIAHGLSRIISLCIK 164


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,236,168
Number of Sequences: 28460
Number of extensions: 10482
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 83
length of database: 4,897,600
effective HSP length: 59
effective length of query: 24
effective length of database: 3,218,460
effective search space: 77243040
effective search space used: 77243040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)