TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148819.3 + phase: 0 /pseudo/partial
         (880 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14807                                                                67  1e-11
BP058056                                                               52  4e-07
AV778217                                                               51  9e-07
BP063575                                                               43  2e-04
BP067056                                                               40  0.002
TC16020 similar to UP|Q9SLX0 (Q9SLX0) Importin alpha 1b, partial...    30  1.7
AV411796                                                               30  1.7
TC9003                                                                 29  2.8
TC14568                                                                29  2.8
TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prote...    29  2.8

>TC14807 
          Length = 534

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 34/54 (62%), Positives = 40/54 (73%)
 Frame = +1

Query: 827 KNAFLMIREEINHLCDEVDRRIKPLLKLETVLDISSSSAPVSEDSSSHTTPPDS 880
           K+A LMI EEIN L DEV RR+KPLL LET +D+SS S  V +DSS  +TPP S
Sbjct: 1   KSALLMIHEEINFLSDEVHRRLKPLLNLETAVDLSSPSVRVPKDSSFQSTPPHS 162


>BP058056 
          Length = 525

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 26/43 (60%), Positives = 31/43 (71%)
 Frame = -1

Query: 838 NHLCDEVDRRIKPLLKLETVLDISSSSAPVSEDSSSHTTPPDS 880
           N L DEV RR+KPLL LET +D+SS S  V +DSS  +TPP S
Sbjct: 525 NFLSDEVHRRLKPLLNLETAVDLSSPSVRVPKDSSFPSTPPHS 397


>AV778217 
          Length = 530

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 35/111 (31%), Positives = 49/111 (43%), Gaps = 6/111 (5%)
 Frame = -3

Query: 766 APLAGCNPRVDDKHSKWLHLRIRPSALPFL------DPVKYNRHGKLKTKAFVDGRWILA 819
           APL G  P++D+ H   LHLRIR    P        +P+    H         DG+W L 
Sbjct: 525 APLPGLRPKIDEDHPSCLHLRIREFGPPSYTITTRGNPLHMPDHSP-------DGKWTLG 367

Query: 820 FRDEESCKNAFLMIREEINHLCDEVDRRIKPLLKLETVLDISSSSAPVSED 870
           F D ++C+ A L I  EI      ++  + PLL+ +  L  S  S     D
Sbjct: 366 FTDAKACEEARLAILNEITKQRSALEYVLAPLLQNDPGLAES*GSLSCDHD 214


>BP063575 
          Length = 494

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = -1

Query: 846 RRIKPLLKLETVLDISSSSAPVSEDSSSHTTPPDS 880
           RR+KPLL LET +D+SS S  V +DSS  +TPP S
Sbjct: 491 RRLKPLLHLETAVDLSSPSVRVPKDSSFPSTPPHS 387


>BP067056 
          Length = 572

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 19/28 (67%), Positives = 23/28 (81%)
 Frame = -2

Query: 836 EINHLCDEVDRRIKPLLKLETVLDISSS 863
           EIN L DEV RR+KPLL LET +D+SS+
Sbjct: 571 EINFLSDEVHRRLKPLLHLETPVDLSSA 488


>TC16020 similar to UP|Q9SLX0 (Q9SLX0) Importin alpha 1b, partial (55%)
          Length = 951

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
 Frame = +3

Query: 221 LYYFSDIISAGIPDV-ERLITDSILMLLIFP---VLLPSLRTVAD----NDMQSGVVTSL 272
           L Y SD  +  I  V E  +   ++ LL+ P   VL+P+LRTV +    +DMQ+ V+ + 
Sbjct: 174 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINH 353

Query: 273 YLLCCILRIV 282
             L C+L ++
Sbjct: 354 QALPCLLNLL 383


>AV411796 
          Length = 365

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/58 (27%), Positives = 28/58 (47%)
 Frame = -1

Query: 304 KCSGGQVNGYIPDHGFTSKSDGIDNDNLAENSAKCLVVNVPCSSSSSDCHPQSITILN 361
           K + GQ   ++P H F+ +  G     L +N  +C+    PC   + DC  + I ++N
Sbjct: 188 KSNVGQFFLHVP-HNFSLRGCGESVPTLGQNLHQCISEIAPCKVQTQDCMWKGIPLVN 18


>TC9003 
          Length = 613

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 729 GKERHFCFLAISVGTSGWLVLAEELP 754
           GK+RHFC  +  V T  + VL  E+P
Sbjct: 389 GKKRHFCSFSCLVATRNYYVLVGEVP 466


>TC14568 
          Length = 1388

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = -1

Query: 630 EPKCMLFPPRMFFSEEDIPEGSSFTAGERMH 660
           EP+  L   R++F  + +P+  SF+AGER H
Sbjct: 836 EPRFFLQFVRVYFFIKSVPDIESFSAGERAH 744


>TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
           partial (35%)
          Length = 848

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -1

Query: 308 GQVNGYIPDHGFTSKSDGIDNDNLAENSAKCLVVNVPCSSSSSDCHPQSITILNNGSSSN 367
           G +  + P + F+  S  I N + A  S        PCSSSSS   P S +   + SSS+
Sbjct: 353 GVIFTHFPWNHFSQMSQQIQNSSAA*LSPHAPHKVSPCSSSSSSSKPSSSSSSPSPSSSS 174

Query: 368 VALREVLLEYVTG-GADVQVLGSLSVL 393
             +     EY T  G+D ++   L +L
Sbjct: 173 FDINP--FEYFTX*GSDPRLEFDLGLL 99


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,230,043
Number of Sequences: 28460
Number of extensions: 242256
Number of successful extensions: 1242
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of query: 880
length of database: 4,897,600
effective HSP length: 98
effective length of query: 782
effective length of database: 2,108,520
effective search space: 1648862640
effective search space used: 1648862640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)