TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148775.2 + phase: 0 /pseudo
         (267 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10950 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei...    28  1.6
TC18536 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei...    28  1.6
TC11790 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei...    28  1.6
TC14314 similar to UP|Q9FPI4 (Q9FPI4) AT5g16110 (AT5g16110/T21H1...    27  4.7
TC11535 similar to AAS10009 (AAS10009) MYB transcription factor,...    26  6.2
BI419045                                                               26  6.2

>TC10950 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
           complete
          Length = 569

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
 Frame = +2

Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
           Y GEF+YV DH    GK   E   R    GV+  R   GV E+  W+A
Sbjct: 191 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 328


>TC18536 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
           complete
          Length = 556

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
 Frame = +2

Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
           Y GEF+YV DH    GK   E   R    GV+  R   GV E+  W+A
Sbjct: 173 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 310


>TC11790 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
           complete
          Length = 474

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
 Frame = +1

Query: 181 YKGEFDYVSDHLLFEGKFSQEFIDRCEYGGVMIVRSLCGV-EL*SWSA 227
           Y GEF+YV DH    GK   E   R    GV+  R   GV E+  W+A
Sbjct: 220 YIGEFEYVDDHR--AGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 357


>TC14314 similar to UP|Q9FPI4 (Q9FPI4) AT5g16110 (AT5g16110/T21H19_30),
           partial (12%)
          Length = 1145

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 119 SAITVLVPY-CSRRVQHHVKCNYSCGYPF*I*CAGGFHFLDFPPTICG 165
           S +  L+P+ C  ++    KC  SC YP    C G  +    PP +CG
Sbjct: 693 SFLFFLLPFLCV*QIMQQQKC-CSCAYP----C*GNQNLRSSPPLVCG 565


>TC11535 similar to AAS10009 (AAS10009) MYB transcription factor, partial
           (17%)
          Length = 559

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 14/38 (36%), Positives = 18/38 (46%)
 Frame = -3

Query: 127 YCSRRVQHHVKCNYSCGYPF*I*CAGGFHFLDFPPTIC 164
           +CS R+     C   C + F   C GGF FLD   + C
Sbjct: 152 FCSLRLSFCSLCLSGCLFSF---CYGGFCFLDCSSSNC 48


>BI419045 
          Length = 370

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 230 YLYGSSYWWKLQSLVLMVPFPR 251
           +L+ SS  WKLQ L+L   FP+
Sbjct: 366 FLFLSSQAWKLQRLLLCTSFPK 301


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.169    0.685 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,246,911
Number of Sequences: 28460
Number of extensions: 78131
Number of successful extensions: 1023
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of query: 267
length of database: 4,897,600
effective HSP length: 89
effective length of query: 178
effective length of database: 2,364,660
effective search space: 420909480
effective search space used: 420909480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 54 (25.4 bits)