TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148775.11 - phase: 0 /pseudo/partial
         (467 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP031101                                                              181  2e-46
TC15272 weakly similar to UP|Q9FUJ0 (Q9FUJ0) Cytokinin oxidase, ...   119  4e-41
TC12428 similar to UP|Q9FUJ1 (Q9FUJ1) Cytokinin oxidase (FAD-lin...   136  6e-33
TC19258 weakly similar to GB|AAG30907.1|11120512|AF303980 cytoki...   114  4e-26
AI967550                                                               34  0.058
AV425475                                                               33  0.099
TC7851 similar to UP|RBS3_PEA (P07689) Ribulose bisphosphate car...    28  2.4
AV422598                                                               28  3.2
TC9946 similar to UP|Q9LLM3 (Q9LLM3) MTD1, partial (42%)               27  5.4
TC11798                                                                27  7.1
BP037392                                                               27  9.3
TC9042 weakly similar to PIR|G86367|G86367 protein F28C11.3 [imp...    27  9.3
TC8223 UP|AAQ87021 (AAQ87021) VDAC1.3, complete                        27  9.3
TC18723                                                                27  9.3

>BP031101 
          Length = 472

 Score =  181 bits (460), Expect = 2e-46
 Identities = 95/162 (58%), Positives = 119/162 (72%), Gaps = 7/162 (4%)
 Frame = +2

Query: 31  TSISDIANLINYS-------NSLPHSFTISPRGQAHSVLGQAMTQNGIVVNMTQLNWYRN 83
           +S+ DIA LI  S       +S+P  F+I+ RGQ HS  GQAM ++G+VV+M +     N
Sbjct: 2   SSVQDIATLIKLSYNNNKVGDSVP--FSIAARGQGHSTKGQAMARDGVVVDMARFREGGN 175

Query: 84  GSGIVVSDCDVKNPLGCYVDVGGEQLWIDVLNATLKHGLTPLSWTDYLYLSVGGTLSNAG 143
           G GI V     K     Y DVGGEQLWIDVL A ++HGLTP+SWTDYLYL+VGGTLSNAG
Sbjct: 176 GVGITVGGGGGKQ---YYADVGGEQLWIDVLRAAMEHGLTPVSWTDYLYLTVGGTLSNAG 346

Query: 144 IGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAV 185
           I GQTF++GPQI++VLE+DVITG+G  VTCS++ NSE+FYAV
Sbjct: 347 ISGQTFKYGPQITSVLEMDVITGKGESVTCSKQTNSELFYAV 472


>TC15272 weakly similar to UP|Q9FUJ0 (Q9FUJ0) Cytokinin oxidase, partial
           (14%)
          Length = 524

 Score =  119 bits (298), Expect(2) = 4e-41
 Identities = 54/76 (71%), Positives = 64/76 (84%)
 Frame = +3

Query: 392 LLHAAKEMDEVKTFQAQNHQILQFCNDAGIKVKEYLSGNKTHQEWVEHFGAKWQQFEERK 451
           L  AA   DEV+ +QAQN +ILQFC  AGIK+KEYL+GNKTH+EWVEHFG KW+ +E+RK
Sbjct: 108 LXTAANGGDEVQKYQAQNQEILQFCKGAGIKIKEYLTGNKTHEEWVEHFGPKWKLWEDRK 287

Query: 452 AKFDPKRILSPGQGIF 467
           A+FDPKRILSPG GIF
Sbjct: 288 AEFDPKRILSPGPGIF 335



 Score = 65.9 bits (159), Expect(2) = 4e-41
 Identities = 31/34 (91%), Positives = 33/34 (96%)
 Frame = +2

Query: 339 SRISDFNEGVFKGIILKQNISAGIVLVYPMNRNK 372
           SRISDFNEGVFKGIILK N++AGIVLVYPMNRNK
Sbjct: 2   SRISDFNEGVFKGIILKXNLTAGIVLVYPMNRNK 103


>TC12428 similar to UP|Q9FUJ1 (Q9FUJ1) Cytokinin oxidase (FAD-linked
           oxidoreductase family), partial (26%)
          Length = 648

 Score =  136 bits (343), Expect = 6e-33
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 1/170 (0%)
 Frame = +2

Query: 10  SQASTDYGHIIHENPFAVLEPTSISDIANLINYSNSLPHSFTISPRGQAHSVLGQAMTQN 69
           S A+ D+G +   +P A++ P+S +D+A  +  +   P+  T++ RG  HS+ GQAM + 
Sbjct: 158 SLAAKDFGGMKSAHPLALIRPSSATDVARAVRAAARTPN-LTVAARGNGHSINGQAMAER 334

Query: 70  GIVVNMTQLNWYRNGSGIVVSDCDVKNPLGCYVDVGGEQLWIDVLNATL-KHGLTPLSWT 128
           G+V++M  +    +   ++  D   ++P   YVDV G  LW DVL   + + GL P SWT
Sbjct: 335 GLVLDMRAMADEEDHFTLICLD---ESP---YVDVSGGALWEDVLKRCVSRFGLAPKSWT 496

Query: 129 DYLYLSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKN 178
           DYL L+VGGTLSNAG+ GQ FR+GPQ ++V EL+V+TG+G+ V CS+ +N
Sbjct: 497 DYLGLTVGGTLSNAGVSGQAFRYGPQTASVAELEVVTGKGDTVICSETQN 646


>TC19258 weakly similar to GB|AAG30907.1|11120512|AF303980 cytokinin oxidase
           {Arabidopsis thaliana;} , partial (7%)
          Length = 417

 Score =  114 bits (284), Expect = 4e-26
 Identities = 53/86 (61%), Positives = 70/86 (80%)
 Frame = +1

Query: 5   NPQILSQASTDYGHIIHENPFAVLEPTSISDIANLINYSNSLPHSFTISPRGQAHSVLGQ 64
           +P+ LS+ASTD+GHI+H+ P  VLEP+S+SDI++LI  SNS    FTI+ RG AHS LGQ
Sbjct: 115 DPKTLSEASTDFGHIVHKTPTLVLEPSSVSDISDLIKQSNSRATPFTIAARGHAHSYLGQ 294

Query: 65  AMTQNGIVVNMTQLNWYRNGSGIVVS 90
           AM + G+VVNMT+LN +RNGSGIV++
Sbjct: 295 AMAEGGVVVNMTELNRFRNGSGIVIT 372


>AI967550 
          Length = 412

 Score = 33.9 bits (76), Expect = 0.058
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
 Frame = +2

Query: 93  DVKNPLGCYVDVGGEQLWIDVLNATLKHGLTPLSWTDYLY---------LSVGGTLSNAG 143
           D+ N     VD+  E  W++   ATL      +S    ++         + VGG +   G
Sbjct: 98  DMMNLNHVSVDMETETAWVEG-GATLGETYYAISQASSVHGFSAGSSPTVGVGGHIGGGG 274

Query: 144 IGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAVLGGLG 190
           +G  + ++G    NV++  ++   G ++   +    +VF+A+ GG G
Sbjct: 275 VGLMSRKYGLAADNVVDALLVDANGQLLD-KETMGEDVFWAIRGGRG 412


>AV425475 
          Length = 344

 Score = 33.1 bits (74), Expect = 0.099
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 133 LSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAVL-GGLGQ 191
           L VGG +     G    ++G    NVL+  ++   G I+   +    ++F+A+  GG G 
Sbjct: 132 LGVGGHIIGGAYGSMMRKYGLGADNVLDARIVDANGRILD-RKAMGEDLFWAIRGGGGGS 308

Query: 192 FGVITRARILL 202
           FG++   +I L
Sbjct: 309 FGILLWWKIKL 341


>TC7851 similar to UP|RBS3_PEA (P07689) Ribulose bisphosphate carboxylase
           small chain 3A, chloroplast precursor  (RuBisCO small
           subunit 3A) , partial (97%)
          Length = 702

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 102 VDVGGEQLWIDVLNATLKHGLTPLSWTDYLYLSVGGTLSNAGIGGQTFR 150
           V   G  + + + N    HGL    W+ ++ L  GGT++    GG+  R
Sbjct: 170 VACNGGNVSVGLSNWEASHGLEASEWSHHVGLCRGGTINGGDSGGRHHR 24


>AV422598 
          Length = 475

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (61%)
 Frame = +1

Query: 225 GADYVEGMLLLNKPPLILSFYPPSDHPRITSL 256
           G  Y +G   +N+PPL++     SDHP ++SL
Sbjct: 349 GEIYSDG---INEPPLMIESVGSSDHPAVSSL 435


>TC9946 similar to UP|Q9LLM3 (Q9LLM3) MTD1, partial (42%)
          Length = 676

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 314 SEELILRSKGLWDVPHPWL 332
           + EL+L+   LW++P PWL
Sbjct: 208 ARELLLKLIDLWEIPPPWL 152


>TC11798 
          Length = 521

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = +1

Query: 220 RNDSNGADYVEGMLLLNKPPLILSFYPPSDHPRITSLVTQYGITYVLELVKYYDTNSQAN 279
           RND+N        L   KP +I   YPP   PR+ ++V +Y +   L+ +K +   S   
Sbjct: 127 RNDAN--------LSQLKPVIIHVNYPPDKLPRMKAVV-EYYVNGKLDALKPFPEGSD*A 279

Query: 280 ITEEVDNLVKGLKFVPTFMF 299
           I E   N  K  +F  +F F
Sbjct: 280 IVEYYVNCSK--QFYCSFFF 333


>BP037392 
          Length = 369

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -3

Query: 137 GTLSNAGIGGQTFRFGPQISNVLELDV 163
           GT+  AG+G + F FG  + N  EL V
Sbjct: 172 GTIPGAGMGEKLFAFGLGVGNAHELHV 92


>TC9042 weakly similar to PIR|G86367|G86367 protein F28C11.3 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (12%)
          Length = 768

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 79  NWYRNGSGIVVSDCDVKNPLGCYVDVGGEQLWIDVLNATLKHGLTPLSW 127
           +W   G+ I + + +  +     V  G   LW+     T+ HGLT L+W
Sbjct: 339 DWLEGGAWI*IQERERGSYAWEVVTCGARGLWV----CTVSHGLTGLTW 205


>TC8223 UP|AAQ87021 (AAQ87021) VDAC1.3, complete
          Length = 1261

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 19/56 (33%), Positives = 25/56 (43%)
 Frame = +2

Query: 273 DTNSQANITEEVDNLVKGLKFVPTFMFQKDVTYEEFLDRVHSEELILRSKGLWDVP 328
           DTNS  + T  VD    GLK + +F+F    + +  L   H    I  S GL   P
Sbjct: 242 DTNSNLHTTITVDEPAPGLKTIFSFIFPDQKSGKVELQYQHEYAGISTSIGLTASP 409


>TC18723 
          Length = 333

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 8/9 (88%), Positives = 9/9 (99%)
 Frame = +1

Query: 328 PHPWLNMFI 336
           PHPWLNMF+
Sbjct: 73  PHPWLNMFV 99


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,236,076
Number of Sequences: 28460
Number of extensions: 114888
Number of successful extensions: 533
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of query: 467
length of database: 4,897,600
effective HSP length: 94
effective length of query: 373
effective length of database: 2,222,360
effective search space: 828940280
effective search space used: 828940280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)