BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148775.1 - phase: 0
(207 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9411 similar to UP|Q41102 (Q41102) Phaseolin G-box binding pro... 43 3e-05
TC18919 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4... 40 2e-04
TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-li... 38 0.001
TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium t... 35 0.012
CB827320 34 0.021
BI419711 32 0.079
BP036451 32 0.079
BP038590 31 0.18
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura... 31 0.18
TC18373 30 0.23
TC8595 similar to PIR|T09390|T09390 21K protein precursor - alfa... 30 0.39
AV772495 29 0.67
BP044559 28 0.87
AV410591 28 1.1
BI417326 28 1.1
TC10516 similar to UP|O65875 (O65875) FtsZ protein, partial (33%) 28 1.5
AV422106 28 1.5
BP035703 28 1.5
TC10682 similar to PIR|A86408|A86408 FH protein interacting prot... 27 1.9
TC17508 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H... 27 3.3
>TC9411 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (30%)
Length = 705
Score = 43.1 bits (100), Expect = 3e-05
Identities = 23/63 (36%), Positives = 38/63 (59%), Gaps = 3/63 (4%)
Frame = +2
Query: 145 RDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFII 201
R R + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+ L+ I
Sbjct: 137 RPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYI 316
Query: 202 NAL 204
L
Sbjct: 317 TEL 325
>TC18919 similar to GB|AAN73298.1|25141207|BT002301 At4g16430/dl4240w
{Arabidopsis thaliana;}, partial (29%)
Length = 604
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/47 (40%), Positives = 34/47 (71%), Gaps = 3/47 (6%)
Frame = +3
Query: 145 RDRNQAARPSSNQ---LHHMISERRRREKLNENFQALRALLPQGTKV 188
+ R + +P++ + L+H+ +ER+RREKLN+ F ALRA++P +K+
Sbjct: 360 KPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKM 500
>TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-like, partial
(23%)
Length = 1593
Score = 37.7 bits (86), Expect = 0.001
Identities = 16/45 (35%), Positives = 27/45 (59%)
Frame = +2
Query: 145 RDRNQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKVR 189
+D + S+ + H ++E+RRR K+NE FQ LR ++P + R
Sbjct: 347 KDAKATDKASAIRSKHSVTEQRRRSKINERFQILRDIIPHSEQKR 481
>TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
transporter, partial (34%)
Length = 1007
Score = 34.7 bits (78), Expect = 0.012
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 160 HMISERRRREKLNENFQALRALLP 183
H+I+ERRRREKL+++ AL AL+P
Sbjct: 31 HIIAERRRREKLSQSLIALAALIP 102
>CB827320
Length = 522
Score = 33.9 bits (76), Expect = 0.021
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 154 SSNQLHHMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINAL 204
SS +++SER RR+KLNE ALR+++P +K+ +I I L
Sbjct: 214 SSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIEHL 366
>BI419711
Length = 539
Score = 32.0 bits (71), Expect = 0.079
Identities = 16/45 (35%), Positives = 28/45 (61%), Gaps = 4/45 (8%)
Frame = +1
Query: 143 RMRDRNQAARP----SSNQLHHMISERRRREKLNENFQALRALLP 183
R R R ++A+ + ++ H+ ER RR+++NE ALR+L+P
Sbjct: 340 RKRRRTKSAKNMEEIENQRMTHIAVERNRRKQMNEYLSALRSLMP 474
>BP036451
Length = 511
Score = 32.0 bits (71), Expect = 0.079
Identities = 14/43 (32%), Positives = 25/43 (57%)
Frame = +2
Query: 163 SERRRREKLNENFQALRALLPQGTKVRTKLLISSCCFIINALL 205
+E+ RRE+LN ++ LR+L+P TK+ ++ I L+
Sbjct: 332 TEKERREQLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELI 460
>BP038590
Length = 547
Score = 30.8 bits (68), Expect = 0.18
Identities = 22/85 (25%), Positives = 36/85 (41%), Gaps = 3/85 (3%)
Frame = +2
Query: 51 LPLQ---LQQLPQITPTQLYPTTQIENDVIMRAIQNVLSTPPSHQHQPQQNYVAHPEASA 107
LPLQ L + +I T PT ++ I + + P H HQP + VAH
Sbjct: 224 LPLQRNHLHPIKRILHTIHLPTPKLTQQPIRHKLNILTHQIPIHPHQPARQRVAHKLPLN 403
Query: 108 FGRYRHDKSPNIGSNFRRQSLMKRS 132
R H+ + + R Q ++++
Sbjct: 404 LHRITHNPLHTLLAKLRPQQRVQQT 478
>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
pp78/81, partial (5%)
Length = 710
Score = 30.8 bits (68), Expect = 0.18
Identities = 25/92 (27%), Positives = 35/92 (37%), Gaps = 4/92 (4%)
Frame = +3
Query: 19 IPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYPTTQIENDVIM 78
+PP +PPQ P +PP P N Q+ +PQ P +P +
Sbjct: 114 VPPPNAPPQLPPQ------QGLPPSFPPPNQFSQTQIPAVPQRDP--YFPPPVQSQETPN 269
Query: 79 RAIQNVLSTPPSHQ--HQPQQNY--VAHPEAS 106
+ Q L+ P Q P Q Y HP+ S
Sbjct: 270 QQYQQPLAPQPHPQPGAPPHQQYQQTPHPQYS 365
>TC18373
Length = 437
Score = 30.4 bits (67), Expect = 0.23
Identities = 14/27 (51%), Positives = 19/27 (69%)
Frame = +1
Query: 164 ERRRREKLNENFQALRALLPQGTKVRT 190
E++RREKLNE F L ++L G V+T
Sbjct: 262 EKQRREKLNERFCELSSVLEPGRPVKT 342
>TC8595 similar to PIR|T09390|T09390 21K protein precursor - alfalfa
{Medicago sativa;}, partial (93%)
Length = 811
Score = 29.6 bits (65), Expect = 0.39
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 PPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITP-TQLYPTTQIENDVIM 78
PP +S P +P TQL N P P + +L +P T+ P D
Sbjct: 104 PPTSSNPPAAPPNTQLSASNPSPPTPPPSNKTHTSSSKLHSPSPSTEPSPPKPSSQDAKT 283
Query: 79 RAIQNVLSTPPS 90
N STPPS
Sbjct: 284 SGDSNPRSTPPS 319
Score = 25.4 bits (54), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 40 IPPMRPVSNTLLPLQLQQL 58
+PP+RPVS+ P QL Q+
Sbjct: 66 VPPLRPVSHHRKPHQLHQI 122
>AV772495
Length = 572
Score = 28.9 bits (63), Expect = 0.67
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 160 HMISERRRREKLNENFQALRALLPQGTKVRTKLLISSCCF 199
H ++ER RREK+N + L+ L+P KLL+S F
Sbjct: 423 HSLAERARREKINARMKLLQELVPG----CYKLLVSETFF 316
>BP044559
Length = 553
Score = 28.5 bits (62), Expect = 0.87
Identities = 16/68 (23%), Positives = 32/68 (46%)
Frame = -1
Query: 1 MRSLSTAGSPEYSSLIFNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQ 60
+ L G+ + +L + P T PP+++ + T+LGG +IP ++ + + +
Sbjct: 532 LAKLPYLGAVFHETLRKHSPSPTVPPRYAHEDTELGGYHIPAGSEIAINIYGCNMDEKQW 353
Query: 61 ITPTQLYP 68
P Q P
Sbjct: 352 ENPQQWTP 329
>AV410591
Length = 429
Score = 28.1 bits (61), Expect = 1.1
Identities = 16/45 (35%), Positives = 19/45 (41%)
Frame = +2
Query: 24 SPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYP 68
SPP FSP +T PP R S++L P TP P
Sbjct: 8 SPPSFSPAVTAAENYPPPPPRNHSSSLYPTLSTSFGAPTPASAKP 142
>BI417326
Length = 478
Score = 28.1 bits (61), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 2 RSLSTAGSPEYSSLIFNIPPGTSPP 26
RS ST G S ++ PP TSPP
Sbjct: 222 RSFSTPGVTSISGILMAAPPSTSPP 296
>TC10516 similar to UP|O65875 (O65875) FtsZ protein, partial (33%)
Length = 562
Score = 27.7 bits (60), Expect = 1.5
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +2
Query: 26 PQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYP 68
P F P TQ+ ++PP + L PL L P++ P L P
Sbjct: 53 PHFLPSQTQMSFSHLPPSTTMHYPLHPLSLSTPPEL-PESLAP 178
>AV422106
Length = 461
Score = 27.7 bits (60), Expect = 1.5
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = +3
Query: 37 GVNIPPMRPVSNTLLPLQLQQLPQITPTQLYPTTQI 72
G N R +N L PL++Q LPQ PT L +T+I
Sbjct: 6 GCNFSTSRSNTNVLFPLEVQFLPQ--PTLLICSTKI 107
>BP035703
Length = 455
Score = 27.7 bits (60), Expect = 1.5
Identities = 20/49 (40%), Positives = 25/49 (50%)
Frame = -1
Query: 9 SPEYSSLIFNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQ 57
SP SL F IPP S P+F + LGG N+ +S LL L + Q
Sbjct: 206 SPNKLSL-FLIPPSVSLPRFMCFICHLGGKNLIQFYLISLILLVLWI*Q 63
>TC10682 similar to PIR|A86408|A86408 FH protein interacting protein FIP1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (36%)
Length = 577
Score = 27.3 bits (59), Expect = 1.9
Identities = 18/78 (23%), Positives = 27/78 (34%)
Frame = +3
Query: 18 NIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYPTTQIENDVI 77
N P PP P + PP P++ L PL P TPT + + +
Sbjct: 165 NHTPNPPPPPLPP-------LPPPPPNPMTLILTPLSTLLTPNSTPTTSFHHHHLNPSTL 323
Query: 78 MRAIQNVLSTPPSHQHQP 95
+ + PP + P
Sbjct: 324 LLHSMHAAMPPPPCRQSP 377
>TC17508 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;}, partial (34%)
Length = 999
Score = 26.6 bits (57), Expect = 3.3
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = +2
Query: 17 FNIPPGTSPPQFSPDLTQLGGVNIPPMRPVSNTLLPLQLQQLPQITPTQLYPTTQIENDV 76
+++ T+PP S T +PP P LP LP +PT P + +
Sbjct: 68 YSVASDTTPPP*SASTTTSP---VPPASPTDPXRLPPTTTSLPPPSPTSNSPNRKPKKSP 238
Query: 77 IMRAIQNVLSTP 88
+ + + STP
Sbjct: 239 LASSAVLLPSTP 274
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,792,715
Number of Sequences: 28460
Number of extensions: 54536
Number of successful extensions: 552
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of query: 207
length of database: 4,897,600
effective HSP length: 86
effective length of query: 121
effective length of database: 2,450,040
effective search space: 296454840
effective search space used: 296454840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148775.1