TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148763.8 - phase: 1 /pseudo
         (180 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV426300                                                              162  4e-41
TC18078                                                                69  6e-13
TC19898                                                                34  0.013
TC19449 similar to PIR|E86300|E86300 protein F3O9.30 [imported] ...    26  4.6
BE122483                                                               25  6.0
TC7914 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete      25  7.8

>AV426300 
          Length = 419

 Score =  162 bits (409), Expect = 4e-41
 Identities = 79/127 (62%), Positives = 102/127 (80%)
 Frame = +3

Query: 54  GRPLGLALEKTGELIVADAHLGLLRVTQKEGKEPKVEILANEHDGLKFKLTDGVDVGEDG 113
           GRPLGLA ++ G+LIVADA  GLLRVT+++    ++E+L  E++G KF+LTDGVDV  DG
Sbjct: 3   GRPLGLAFDQNGDLIVADADKGLLRVTRQK----EIEVLVVENEGSKFRLTDGVDVAHDG 170

Query: 114 TIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANRVAIAPDQKF 173
           TIYFT+A+ KY++ D   DILEG P+GRFMSY+P TK+ TLLA +LYF N VA++PDQ F
Sbjct: 171 TIYFTDASSKYSIKDSILDILEGNPNGRFMSYDPTTKRTTLLAHDLYFPNGVAVSPDQHF 350

Query: 174 VVYCETA 180
           VV+CETA
Sbjct: 351 VVFCETA 371


>TC18078 
          Length = 785

 Score = 68.6 bits (166), Expect = 6e-13
 Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
 Frame = +3

Query: 51  HSSGRPLGLALEK-TGELIVADAHLGLLRVTQKEGKEPKVEILANEHDGLKFKLTDGVDV 109
           H  GRPLGL  +K +G+L +ADA+LGL  V    G   +V     E +G  F  T+ +D+
Sbjct: 468 HVCGRPLGLKFDKKSGDLYIADAYLGLKVVGPAGGLATQV---VTEAEGQPFHFTNDMDI 638

Query: 110 GED-GTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLAR 157
            ED   IYFT+++  +    F   +L  +  GR M YN  TK+VT+L R
Sbjct: 639 SEDEDVIYFTDSSTIFQRRQFMLVLLSKDKTGRLMKYNKLTKEVTVLLR 785


>TC19898 
          Length = 540

 Score = 34.3 bits (77), Expect = 0.013
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 51  HSSGRPLGLALE-KTGELIVADAHLGLLRVTQKEG 84
           H  GRPLGL    ++GEL VADA++GL+ V    G
Sbjct: 180 HICGRPLGLCFNMQSGELYVADAYMGLVVVEPNGG 76


>TC19449 similar to PIR|E86300|E86300 protein F3O9.30 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (24%)
          Length = 600

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 57  LGLALEKTGELIVADAHLGLLRVTQKEGKEPKVEILANE 95
           LG  +++ G L++   HLGL  VT+   K+P   +   E
Sbjct: 371 LGFFIKRKGTLVLHLGHLGLFFVTKT*VKQPGHPVATGE 255


>BE122483 
          Length = 247

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +3

Query: 36  IKRITVADSVVENWVHSSGRPLGLALEK 63
           +K +  A+ VVE W    G P+G +  K
Sbjct: 162 VKALAKAEGVVEGWSRWLGSPIGASASK 245


>TC7914 similar to UP|Q8VYW9 (Q8VYW9) Aminotransferase 1, complete
          Length = 1532

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 22/69 (31%), Positives = 30/69 (42%)
 Frame = +2

Query: 39   ITVADSVVENWVHSSGRPLGLALEKTGELIVADAHLGLLRVTQKEGKEPKVEILANEHDG 98
            I  A+ V  +W   +   LGL L +    +    HLG L   Q  G    VE++ N+  G
Sbjct: 1085 IDAAEVVRRSWKRYN-MSLGLGLNQVAGKVFRIGHLGNLNELQLLGCLAGVEMILND-VG 1258

Query: 99   LKFKLTDGV 107
               KL  GV
Sbjct: 1259 YPVKLGSGV 1285


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.330    0.148    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,914,152
Number of Sequences: 28460
Number of extensions: 35009
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of query: 180
length of database: 4,897,600
effective HSP length: 84
effective length of query: 96
effective length of database: 2,506,960
effective search space: 240668160
effective search space used: 240668160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)