BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148762.7 + phase: 2 /partial
(212 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18496 152 4e-38
TC8522 similar to UP|AAR23736 (AAR23736) At5g46870, partial (76%) 114 1e-26
BP035993 86 4e-18
AV415668 69 5e-13
TC12739 29 0.53
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d... 27 2.0
BI418880 27 2.0
TC17096 similar to PIR|C53394|C53394 ribosomal protein L12.C pre... 27 2.6
TC17788 weakly similar to UP|Q8DG48 (Q8DG48) Tll2476 protein, pa... 26 4.5
TC8941 similar to GB|AAH05682.1|13542999|BC005682 carcinoma rela... 26 4.5
TC12394 weakly similar to UP|Q9FEV7 (Q9FEV7) Microtubule-associa... 26 5.9
TC16977 25 7.7
>TC18496
Length = 702
Score = 152 bits (384), Expect = 4e-38
Identities = 82/152 (53%), Positives = 109/152 (70%)
Frame = +2
Query: 57 EDSITYSQMDKFVSSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAAN 116
E + T ++FVSS GEA+T+AQ+VVKTM+AKG+VLSKDA AK FDES VS+TA
Sbjct: 14 ERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATATA 193
Query: 117 KVAELSNKIGLTETINSGIETFKSVDEKYHVTDITKSAATVTGTTAIVVATVTGRAAMAA 176
KV+ELS +IGL+E I++G+E K VD+ Y+V+ TK+A A+ TGR+ +A
Sbjct: 194 KVSELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTKAA-----------ASATGRSVASA 340
Query: 177 GSAIANSSYFAKGALWVSDMLSRAAKSTADLG 208
S + NSSYF+KGALWVS L+RAA+ T+DLG
Sbjct: 341 ASTVVNSSYFSKGALWVSGALTRAAQVTSDLG 436
>TC8522 similar to UP|AAR23736 (AAR23736) At5g46870, partial (76%)
Length = 1069
Score = 114 bits (286), Expect = 1e-26
Identities = 77/216 (35%), Positives = 115/216 (52%), Gaps = 15/216 (6%)
Frame = +1
Query: 8 AYVTFRDAYALETALLLNGSMILDRCISISRWETYTDDSNNWNNLTPNHE---DSITYSQ 64
AYVTF+D+ ETA+LL+G+ I+D +SI+ L P+++ ++ S+
Sbjct: 193 AYVTFKDSQGAETAVLLSGATIVDLPVSIA--------------LDPDYQVPPAALASSE 330
Query: 65 MD-KFVSSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSN 123
+ K S P AL A+ VV +M+AKGF+L KDA AK DE +SSTA+ KV+ +
Sbjct: 331 TEGKGPSGPESALRKAEDVVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQ 510
Query: 124 KIGLTETINSG-----------IETFKSVDEKYHVTDITKSAATVTGTTAIVVATVTGRA 172
K+GLTE I++G + + VD+K+ V++ TKSA V +
Sbjct: 511 KLGLTEKISAGASVVSAGASVVTDRVREVDQKFQVSEKTKSA-----------FAVAEQK 657
Query: 173 AMAAGSAIANSSYFAKGALWVSDMLSRAAKSTADLG 208
AGSAI + Y GA WV+ S+ AK+ D+G
Sbjct: 658 VSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVG 765
>BP035993
Length = 584
Score = 86.3 bits (212), Expect = 4e-18
Identities = 54/128 (42%), Positives = 77/128 (59%), Gaps = 1/128 (0%)
Frame = +3
Query: 8 AYVTFRDAYALETALLLNGSMILDRCISISRWETYTDDSNNWNNLTPNHEDSITYSQMDK 67
AYVTF+D+ ETA+LL+G+ I+D ++I+ TY L P ++T S +
Sbjct: 198 AYVTFKDSQGAETAVLLSGATIVDMSVTITLDPTY--------QLPPA---ALTSSVKES 344
Query: 68 FVSSPGE-ALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIG 126
+ E AL A+ VV +M+AKGF+L KDA AK FDE +SSTA+ KVA K+G
Sbjct: 345 EAPAGAESALQKAEDVVSSMLAKGFILGKDAVHKAKTFDEKLQLSSTASAKVASFDQKVG 524
Query: 127 LTETINSG 134
L+E I++G
Sbjct: 525 LSEKISAG 548
>AV415668
Length = 335
Score = 69.3 bits (168), Expect = 5e-13
Identities = 45/125 (36%), Positives = 66/125 (52%)
Frame = +1
Query: 2 SDYESTAYVTFRDAYALETALLLNGSMILDRCISISRWETYTDDSNNWNNLTPNHEDSIT 61
SD AYVTF+++ ETA+LL GS I D ++I+ E Y L P+ S
Sbjct: 4 SDRTQVAYVTFKNSQGAETAVLLTGSKIADLYVTITPVEKY--------QLPPDALPSSP 159
Query: 62 YSQMDKFVSSPGEALTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAEL 121
+Q A+ A+ V+ TM+A+GF+L KDA K+FDE +S A++ VA +
Sbjct: 160 TNQS-------AAAVKKAEDVISTMLARGFILGKDAINKTKSFDERHHWTSNASSTVAFI 318
Query: 122 SNKIG 126
K+G
Sbjct: 319 DRKMG 333
>TC12739
Length = 332
Score = 29.3 bits (64), Expect = 0.53
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3
Query: 194 SDMLSRAAKSTADLGHHQN 212
SDMLSR A++ A+LG H+N
Sbjct: 330 SDMLSRQAQAAANLGQHEN 274
>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
partial (97%)
Length = 2266
Score = 27.3 bits (59), Expect = 2.0
Identities = 21/67 (31%), Positives = 31/67 (45%)
Frame = +1
Query: 34 ISISRWETYTDDSNNWNNLTPNHEDSITYSQMDKFVSSPGEALTMAQQVVKTMVAKGFVL 93
I IS+WE TDD L + D + +MD V MA++ + KGF +
Sbjct: 1558 IPISKWEDLTDDEEAIKVLKEVYGDDV--EEMDLLVG------LMAEKKI-----KGFAI 1698
Query: 94 SKDAFVM 100
S+ AF +
Sbjct: 1699 SETAFTI 1719
>BI418880
Length = 606
Score = 27.3 bits (59), Expect = 2.0
Identities = 27/102 (26%), Positives = 45/102 (43%)
Frame = +2
Query: 34 ISISRWETYTDDSNNWNNLTPNHEDSITYSQMDKFVSSPGEALTMAQQVVKTMVAKGFVL 93
I +E + DS W+NLT N +++ YS+ S G L ++ + ++ KG V
Sbjct: 296 IDTDTYEWFKVDS--WDNLTKNKQEARAYSK--DISSYCGRLLEDTEEELAELIKKGSVK 463
Query: 94 SKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETINSGI 135
D + D S+ S T + AE+ + E N G+
Sbjct: 464 VGDVSKVL-CQDLSKHCSRTRVSHEAEVVDDGDKEEL*NLGL 586
>TC17096 similar to PIR|C53394|C53394 ribosomal protein L12.C precursor,
chloroplast - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (74%)
Length = 677
Score = 26.9 bits (58), Expect = 2.6
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -3
Query: 150 ITKSAATVTGTTAIVVATVTGRAAMAAGS 178
IT S + + TTA + G AAMAAG+
Sbjct: 336 ITTSNSVCSSTTATAASAAAGAAAMAAGA 250
>TC17788 weakly similar to UP|Q8DG48 (Q8DG48) Tll2476 protein, partial (16%)
Length = 598
Score = 26.2 bits (56), Expect = 4.5
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Frame = +3
Query: 26 GSMILDRCISISRWETYTDDSNNWNNLTPNHEDSI-TYSQMDKFVS 70
GS I RC +SNN+NN P +SI YSQ+++ ++
Sbjct: 252 GSAIRIRC----------SNSNNYNNTKPPQSESIQVYSQIERLLT 359
>TC8941 similar to GB|AAH05682.1|13542999|BC005682 carcinoma related gene
{Mus musculus;} , partial (11%)
Length = 701
Score = 26.2 bits (56), Expect = 4.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 9 YVTFRDAYALETALLLNGSMILDRCISISRWETYTDDSN 47
Y T Y T+LLL LD S SRW+ + +DSN
Sbjct: 21 YYT*SVRYHCRTSLLL-----LDSVASTSRWKKHFEDSN 122
>TC12394 weakly similar to UP|Q9FEV7 (Q9FEV7) Microtubule-associated protein
MAP65-1c, partial (11%)
Length = 445
Score = 25.8 bits (55), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 1/38 (2%)
Frame = -3
Query: 24 LNGSMILDRCIS-ISRWETYTDDSNNWNNLTPNHEDSI 60
L SM+ CI S+W+T T + N ++L H D I
Sbjct: 401 LMASMVQPTCIEKTSKWQTLTYTAQNSSSLITCHSDYI 288
>TC16977
Length = 570
Score = 25.4 bits (54), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 177 GSAIANSSYFAKGALWVSDMLSRAAK 202
GSA+ S Y G W++ S+ AK
Sbjct: 29 GSAVKTSRYVTAGTSWLNGAFSKVAK 106
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.122 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,668,994
Number of Sequences: 28460
Number of extensions: 23883
Number of successful extensions: 115
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of query: 212
length of database: 4,897,600
effective HSP length: 86
effective length of query: 126
effective length of database: 2,450,040
effective search space: 308705040
effective search space used: 308705040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148762.7