TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148762.6 + phase: 0 
         (93 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB828026                                                               33  0.011
AW428702                                                               30  0.071
TC19009 similar to UP|AAQ14331 (AAQ14331) MYC1, partial (29%)          30  0.093
BP066245                                                               27  0.79
BP064891                                                               25  1.8
BP081253                                                               23  6.7
BP068066                                                               23  6.7
TC14195 UP|Q40215 (Q40215) RAB8A, complete                             23  8.7
AV420070                                                               23  8.7

>CB828026 
          Length = 542

 Score = 32.7 bits (73), Expect = 0.011
 Identities = 22/79 (27%), Positives = 44/79 (54%)
 Frame = +2

Query: 15  RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLL 74
           R+  ++I + +  L+ LVP         V    +L E  NY+++LQR+V+ LS++L+ + 
Sbjct: 164 RVRREKISERMKFLQDLVPGCSKVTGKAV----MLDEIINYVQSLQRQVEFLSMKLATVN 331

Query: 75  ATIDSDSAEASIIRSLLNQ 93
             +D  + E  + + +L+Q
Sbjct: 332 PRLDF-NIEGLLAKDILHQ 385


>AW428702 
          Length = 387

 Score = 30.0 bits (66), Expect = 0.071
 Identities = 19/60 (31%), Positives = 38/60 (62%)
 Frame = +3

Query: 19 DQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATID 78
          ++I + +  L+ LVP   N+ + K   + +L E  NY+++LQR+V+ LS++L+ +   +D
Sbjct: 21 EKISERMKYLQDLVPGC-NKIAGK---AGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLD 188


>TC19009 similar to UP|AAQ14331 (AAQ14331) MYC1, partial (29%)
          Length = 595

 Score = 29.6 bits (65), Expect = 0.093
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +2

Query: 48 VLQETCNYIRNLQREVDDLSLRL 70
          VL E  NYI++LQR+V+ LS++L
Sbjct: 8  VLDEIINYIQSLQRQVEFLSMKL 76


>BP066245 
          Length = 476

 Score = 26.6 bits (57), Expect = 0.79
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 5   RSRQQSGGSTRISDDQIIDLVCKLRQL-VPEIRNRRSDKVPASKVLQETCNYI 56
           R R+    +  +S + IIDL+ KLR+  +  ++ RR++ +     L +  N++
Sbjct: 461 RLRKHDRATRNLSGEPIIDLINKLRKREIALLQQRRNNSISGPTALTQLHNHL 303


>BP064891 
          Length = 480

 Score = 25.4 bits (54), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 65  DLSLRLSQLLATIDSDSAEASIIRSLLN 92
           DL+L LS LLA  +S  +  S  + LLN
Sbjct: 125 DLALLLSLLLAVFESSQSSTSSSKGLLN 42


>BP081253 
          Length = 515

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 16  ISDDQIIDLVCKLRQLVPE 34
           + DD ++ L+CKLR  + E
Sbjct: 412 LPDDTVLILMCKLRDFISE 356


>BP068066 
          Length = 427

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 16  ISDDQIIDLVCKLRQLVPE 34
           + DD ++ L+CKLR  + E
Sbjct: 338 LPDDTVLILMCKLRDFISE 282


>TC14195 UP|Q40215 (Q40215) RAB8A, complete
          Length = 1171

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 13/24 (54%), Positives = 18/24 (74%)
 Frame = +3

Query: 50  QETCNYIRNLQREVDDLSLRLSQL 73
           QET +  R LQ ++ +LSLRLS+L
Sbjct: 723 QETSS--RGLQTQILELSLRLSRL 788


>AV420070 
          Length = 403

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 25  VCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQRE 62
           +C +  L+  +  R       S ++   CNY  NLQ++
Sbjct: 171 ICSITNLLNALFTRDIHNWRCSTIIVPFCNYRSNLQQQ 58


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.130    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,148,721
Number of Sequences: 28460
Number of extensions: 10308
Number of successful extensions: 59
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 93
length of database: 4,897,600
effective HSP length: 69
effective length of query: 24
effective length of database: 2,933,860
effective search space: 70412640
effective search space used: 70412640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)