BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148755.10 - phase: 0 /pseudo
(292 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12731 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (33%) 144 2e-35
AV415503 132 5e-32
TC17572 similar to UP|O80910 (O80910) At2g38410 protein, partial... 110 2e-25
TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like p... 100 4e-22
AU252170 65 1e-11
AV408126 59 1e-09
TC9766 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/... 49 1e-06
TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, parti... 31 0.21
AV769326 28 2.4
TC18951 similar to UP|Q9LU19 (Q9LU19) Gb|AAB63649.1, partial (18%) 27 4.0
TC19640 similar to UP|AROF_TOBAC (P27608) Phospho-2-dehydro-3-de... 26 6.9
TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protei... 26 9.0
BP046224 26 9.0
TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, parti... 26 9.0
>TC12731 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (33%)
Length = 580
Score = 144 bits (363), Expect = 2e-35
Identities = 69/141 (48%), Positives = 99/141 (69%)
Frame = +3
Query: 2 AAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNAQLYAVML 61
AA V ATS+ L+ DW NIE+ +++ D R+AKD +K +KKRLG+K+P QL A+ +
Sbjct: 150 AAAFVERATSDALTGPDWAVNIELCDIINMDPRQAKDALKILKKRLGSKSPKTQLLALFV 329
Query: 62 LEMLMNNIGDHINEQVVRAEVIPILVKIVKKKSDLPVREQIFLLLDATQTSLGGASGKFP 121
LE L N G+++ +Q++ +++ +VKIVKKK DL VRE+I +L+D Q + GG SG FP
Sbjct: 330 LETLSKNXGENVFQQIIERDILKEMVKIVKKKPDLNVREKILILIDTWQEAFGGQSGVFP 509
Query: 122 QYYKAYYDLVSAGVQFPQRAQ 142
QYY AY +L SAGV+FP R +
Sbjct: 510 QYYAAYNELKSAGVEFPPRGE 572
>AV415503
Length = 261
Score = 132 bits (333), Expect = 5e-32
Identities = 66/84 (78%), Positives = 76/84 (89%), Gaps = 2/84 (2%)
Frame = +1
Query: 66 MNNIGDHINEQVVRAEVIPILVKIVKKKSDLPVREQIFLLLDATQTSLGGASGKFPQYYK 125
MNN G+HI+EQV+ VIPILVK+VKKKSDLPVRE+IFLLLDATQTSLGGASGKFPQYY
Sbjct: 4 MNNTGEHIHEQVIDTGVIPILVKLVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYN 183
Query: 126 AYYDLVSAGVQFPQ--RAQVVQSN 147
AYY+LV+AG++FPQ + QVVQSN
Sbjct: 184 AYYELVNAGIRFPQGPQPQVVQSN 255
>TC17572 similar to UP|O80910 (O80910) At2g38410 protein, partial (28%)
Length = 772
Score = 110 bits (276), Expect = 2e-25
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 10/191 (5%)
Frame = +2
Query: 86 LVKIVKKKSDLPVREQIFLLLDATQTSLGGASGKFPQYYKAYYDLVSAGVQFPQRAQVVQ 145
++KIV+KK+D+ VR++I LLLD+ Q + GG GK PQYY AY +L +GV FP+R
Sbjct: 26 MIKIVRKKADMHVRDKILLLLDSWQEAFGGPGGKCPQYYWAYEELKRSGVVFPKRT---- 193
Query: 146 SNRPSLQPNTTNNVPKREPSPLRRGRVAQKAESNTVPESRI----------IQKASNVLE 195
P P T ++ G + S T+ E+ ++ VL+
Sbjct: 194 ---PDAAPIFTPPPTHLTARHMQPGYGMPSSSSKTLDETMATEIESLSFSSLESMQQVLD 364
Query: 196 VLKEVLDAVDAKHPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIEVNEQLQ 255
+L ++L AV+ + +DE +DLV++C ++++M ++ + DE ++ R +E+N+ +Q
Sbjct: 365 LLSDMLQAVNPNDREAVKDEVIIDLVDRCRTNQKKLMQMLTTTGDEELLGRGLELNDTIQ 544
Query: 256 KVLERHDDLLS 266
L RHD ++S
Sbjct: 545 SFLARHDAIVS 577
>TC8188 similar to UP|Q9LFL3 (Q9LFL3) TOM (Target of myb1)-like protein
(AT5g16880/F2K13_30), partial (77%)
Length = 1574
Score = 100 bits (248), Expect = 4e-22
Identities = 79/275 (28%), Positives = 143/275 (51%), Gaps = 7/275 (2%)
Frame = +3
Query: 4 ELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNAQLYAVMLLE 63
+LV ATSE L E DW N+ + +L+ D+ + D+++AIKKR+ +K+P Q A++LLE
Sbjct: 255 KLVEDATSEALDEPDWATNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQYLALVLLE 434
Query: 64 MLMNNIGDHINEQVVRAEVIPILVKIV-KKKSDLPVREQIFLLLDATQTSLGGASGKFPQ 122
+ N +E V V+ +V+++ + + R + ++++A S G P
Sbjct: 435 TCVKNCEKAFSE-VAAERVLDEMVRLIDDPHTVVNNRNKALIMIEAWGESTGELR-YLPV 608
Query: 123 YYKAYYDLVSAGVQFPQRAQVVQSNRPSLQPNTTNNVPKR----EPSPLRRGRVAQKAES 178
+ + Y L S G++FP R +S P P + +VP++ E L + + S
Sbjct: 609 FEETYKSLKSRGIRFPGRDN--ESLAPIFTPPPSVSVPEQQQDVEQFQLEQFQHEVPVLS 782
Query: 179 NTVPESR-IIQKASNVLEVLKEVLDAVDAKHPQGARDEFTLDLVEQCSFQKQRVMHLVMA 237
T +++ A N +E+L VL + + +D+ T LV+QC + V +V
Sbjct: 783 FTPEQTKEAFDVARNSIELLSTVLSS--SPQQDVLQDDLTTTLVQQCRRSQSTVQRIVET 956
Query: 238 SRD-ERIVSRAIEVNEQLQKVLERHDDLLSSKDTT 271
S D E ++ A+ VN+++QKVL++++++ K TT
Sbjct: 957 SGDNEALLFEALNVNDEIQKVLDKYEEV--KKPTT 1055
>AU252170
Length = 350
Score = 65.1 bits (157), Expect = 1e-11
Identities = 33/71 (46%), Positives = 45/71 (62%)
Frame = +2
Query: 1 MAAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNAQLYAVM 60
M LV ATS+ L DW NIEI +++ RD ++KDVVK +KKR+G+ + QL A+
Sbjct: 134 MVNPLVERATSDMLIGPDWALNIEICDILNRDPAQSKDVVKGLKKRIGSTSSKVQLLALT 313
Query: 61 LLEMLMNNIGD 71
LLE + N GD
Sbjct: 314 LLETIXKNCGD 346
>AV408126
Length = 428
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +1
Query: 2 AAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNAQLYAVML 61
A V ATS+ L DW NIEI + + + + KDVVKA+KKRL +K+ QL A+ L
Sbjct: 217 ATVAVEKATSDLLMGPDWTMNIEICDSINSNHWQPKDVVKAVKKRLQHKSSKVQLLALTL 396
Query: 62 LEMLMNNIGD 71
LE ++ N G+
Sbjct: 397 LETMVKNCGE 426
>TC9766 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/F9P14_4),
partial (43%)
Length = 640
Score = 48.5 bits (114), Expect = 1e-06
Identities = 25/88 (28%), Positives = 52/88 (58%)
Frame = +1
Query: 3 AELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNAQLYAVMLL 62
+++V+ AT E L E +W N+ I ++ D+ +VVKAIK+++ +K+P Q ++ LL
Sbjct: 223 SKMVDEATLETLEEPNWGMNLRICGMINSDEFNGSEVVKAIKRKINHKSPVVQRLSLDLL 402
Query: 63 EMLMNNIGDHINEQVVRAEVIPILVKIV 90
E N + + +V +++ +V+++
Sbjct: 403 ETCAMNC-EKVFSEVASEKLLEDMVRLI 483
>TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, partial (10%)
Length = 901
Score = 31.2 bits (69), Expect = 0.21
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = +3
Query: 149 PSLQPNTTNNVPKREPSPLRRGRVAQKAESNTVP 182
PS+ P T P PSPLRR R A +T P
Sbjct: 153 PSISPTTKPTAPSPSPSPLRRRRAAGSHGVSTSP 254
>AV769326
Length = 262
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 251 NEQLQKVLERHDDLLSSKDTTTVNHFDH 278
N+ +VL RHDDLLS ++++H DH
Sbjct: 1 NQLRSEVLSRHDDLLS--QLSSLHHADH 78
>TC18951 similar to UP|Q9LU19 (Q9LU19) Gb|AAB63649.1, partial (18%)
Length = 397
Score = 26.9 bits (58), Expect = 4.0
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 3 AELVNAATSEKLSEIDWMKNIEISELVARDQRK-AKDVVKAIKKRLGNKNPNAQLYAVML 61
+ ++++AT+++ K EI EL+ K+V + + KRL +K+P + A+ +
Sbjct: 46 SRMIDSATADEDKVTPVYKLEEICELLRSSHASIVKEVSEFVLKRLEHKSPIVKQKALRV 225
Query: 62 LEMLMNNIGDHINEQVVRAEV 82
++ ++ G ++ R V
Sbjct: 226 IKYVVGKSGVEFRREMQRHSV 288
>TC19640 similar to UP|AROF_TOBAC (P27608)
Phospho-2-dehydro-3-deoxyheptonate aldolase 1,
chloroplast precursor (Phospho-2-keto-3-deoxyheptonate
aldolase 1) (DAHP synthetase 1)
(3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1)
, partial (9%)
Length = 431
Score = 26.2 bits (56), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 145 QSNRPSLQPNTTNNVPKREPSPLRR 169
Q + L P NN P R+P P+RR
Sbjct: 236 QPSTTLLSPPRNNNQPPRQPPPVRR 310
>TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protein-4,
partial (37%)
Length = 1050
Score = 25.8 bits (55), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 262 DDLLSSKDTTTVNHFDHEEAEEEEE 286
DDLL + ++ ++ EE EEEEE
Sbjct: 47 DDLLDFSNGKEMDDYEEEEEEEEEE 121
>BP046224
Length = 478
Score = 25.8 bits (55), Expect = 9.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 123 YYKAYYDLVSAGVQFPQRAQVVQSNRPSLQPNTTNNVPKREPSPLR 168
+Y YY+L+ QR ++ + R P + K PSPLR
Sbjct: 294 FYYYYYNLIYKNSTSVQRRPLLNNFRRLGLPENLHRARKGPPSPLR 431
>TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (28%)
Length = 695
Score = 25.8 bits (55), Expect = 9.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 260 RHDDLLSSKDTTTVNHFDHEEAEEEEEPEQ 289
RHD + +D V D EE EEEEE E+
Sbjct: 152 RHDSAIVVRDLKEV--IDMEEVEEEEEGEK 69
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.130 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,568,428
Number of Sequences: 28460
Number of extensions: 36546
Number of successful extensions: 220
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of query: 292
length of database: 4,897,600
effective HSP length: 90
effective length of query: 202
effective length of database: 2,336,200
effective search space: 471912400
effective search space used: 471912400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148755.10