BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148755.1 + phase: 0
(190 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11739 similar to UP|Q9FZA1 (Q9FZA1) F3H9.7 protein, partial (26%) 51 1e-07
AV769491 38 0.001
TC7933 weakly similar to UP|AAQ56728 (AAQ56728) Polygalacturonas... 34 0.014
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 34 0.018
TC19436 similar to UP|Q93Y06 (Q93Y06) Receptor protein kinase-li... 33 0.024
AV421229 33 0.031
BP039012 32 0.053
TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2... 32 0.069
TC11788 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 prote... 32 0.069
CB826709 31 0.12
TC17395 similar to UP|Q9LN83 (Q9LN83) T12C24.17, partial (37%) 31 0.12
TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S1... 31 0.15
TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein... 31 0.15
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 30 0.20
TC18669 similar to UP|Q93Y39 (Q93Y39) ATP-dependent RNA helicase... 30 0.20
BP058233 30 0.20
BP048381 30 0.26
BP085186 30 0.26
TC15694 weakly similar to UP|Q8W042 (Q8W042) Prenylated Rab rece... 30 0.26
BP038942 30 0.34
>TC11739 similar to UP|Q9FZA1 (Q9FZA1) F3H9.7 protein, partial (26%)
Length = 485
Score = 50.8 bits (120), Expect = 1e-07
Identities = 29/66 (43%), Positives = 40/66 (59%)
Frame = +2
Query: 120 PSTLFSRLTIMEDEKKQGSVINEINIEEEEKAIKERRFYLHPSPRSKASGFNEPELLNLF 179
PS S +T + D+ + + EE+KAI E+ FYLHPSP S +EP+LL LF
Sbjct: 17 PSLTLSPVTPLNDD-----ALGNSSSSEEDKAIAEKGFYLHPSPVSTPRD-SEPQLLPLF 178
Query: 180 PLASPK 185
PL+SP+
Sbjct: 179 PLSSPR 196
>AV769491
Length = 373
Score = 38.1 bits (87), Expect = 0.001
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = -2
Query: 150 KAIKERRFYLHPSPRSKASGFNEPELLNLFPLASPKA 186
KAIKE+ F+LHPSP + EP LL LF SP+A
Sbjct: 372 KAIKEKGFFLHPSPSTTPRDL-EPRLLPLFLTTSPRA 265
>TC7933 weakly similar to UP|AAQ56728 (AAQ56728) Polygalacturonase
inhibiting protein, partial (78%)
Length = 1320
Score = 34.3 bits (77), Expect = 0.014
Identities = 27/70 (38%), Positives = 33/70 (46%), Gaps = 2/70 (2%)
Frame = +1
Query: 55 ITKRTPPKLHERRKCMKPKLEIVK-PNLQYHKQPGAS-PSSKSRNSSFPSSPVSGSGSSS 112
I PKL E R P L + QYH S SS S ++SFPSSP S
Sbjct: 181 IVSNATPKLTESRHSSYPPLSQTQISQAQYHLLWVTSLTSSTSTSTSFPSSPAQSSP--- 351
Query: 113 LLPSPTTPST 122
PSP++PS+
Sbjct: 352 --PSPSSPSS 375
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 33.9 bits (76), Expect = 0.018
Identities = 33/128 (25%), Positives = 52/128 (39%), Gaps = 9/128 (7%)
Frame = -2
Query: 4 PPVHGSTTGDCKPLTTFVHTNTGAFREVVQRLTGPSEGNATK--EEQTAKVAPITKRTPP 61
PP S++ + F+ T AF L+ PS + +K + ++ A +RT
Sbjct: 423 PPSSESSSPEPSLSDLFLFDGTPAFSPSSLSLSSPSSSSGSKSLDASSSSAAATVRRTRY 244
Query: 62 KLHERRKCMKPKLEIVKPNLQYH------KQPGASPSSKSRNSSFPSSPVSG-SGSSSLL 114
+ + + + P PSS S +SS SSP G S SSS
Sbjct: 243 SVPKSSSSSSSSSSSSSSSSSSSGSPPPPRPPSTPPSSSSSSSSSSSSPPPGASSSSSSS 64
Query: 115 PSPTTPST 122
PS ++PS+
Sbjct: 63 PSSSSPSS 40
>TC19436 similar to UP|Q93Y06 (Q93Y06) Receptor protein kinase-like protein,
partial (19%)
Length = 570
Score = 33.5 bits (75), Expect = 0.024
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Frame = +2
Query: 18 TTFVHTNTGAFREVVQRLTGPSEGNATKEEQTAKVAPITKRTPPKLHERRK-CMKPKLEI 76
+TF+H N +F + S+ +++ + P TPP+ H+ + C +
Sbjct: 8 STFIHVNNTSFLII-------SKPHSSLSSSSLPPPPPLSMTPPRSHQTQSPCYPSNAKQ 166
Query: 77 VKPNLQYHKQPGASPSSKSRNSS---FPSSPVSGSGSSSLLPSPTTPS 121
K + A+ ++ + S+ SS S S S PSP TPS
Sbjct: 167 TKTTSSSTRSTSATTTANGKESNAHRVASSASSSKTSPSPAPSPRTPS 310
>AV421229
Length = 262
Score = 33.1 bits (74), Expect = 0.031
Identities = 18/37 (48%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Frame = +1
Query: 6 VHGSTTGD--CKPLTTFVHTNTGAFREVVQRLTGPSE 40
+H T G P TTFV ++ FR VVQ+LTG SE
Sbjct: 40 LHSPTYGSDPTTPNTTFVQADSSNFRAVVQKLTGASE 150
>BP039012
Length = 582
Score = 32.3 bits (72), Expect = 0.053
Identities = 26/78 (33%), Positives = 32/78 (40%), Gaps = 9/78 (11%)
Frame = +1
Query: 54 PITKRTPPKLHERRKCMKP-------KLEIVKP--NLQYHKQPGASPSSKSRNSSFPSSP 104
P+ PP H P K+ ++ P +L H P SPS S+NS
Sbjct: 190 PLPLLPPPASHSGGSLSPPPPTPPPHKMTVLHPLLHLHLHLPPSLSPSPTSKNS------ 351
Query: 105 VSGSGSSSLLPSPTTPST 122
S S SSS P P PST
Sbjct: 352 -STSRSSSSAPIPPPPST 402
>TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2,2, partial
(94%)
Length = 1199
Score = 32.0 bits (71), Expect = 0.069
Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 18/79 (22%)
Frame = +1
Query: 67 RKCMKPKLEIV-----KPNLQYHKQ----PGASPSSKSRNSSFPS---------SPVSGS 108
RK KPK V + + +H+ P +SPS S S PS SP S S
Sbjct: 88 RKTSKPKHREVISWHTRTTMTHHQHRSSTPPSSPSGPSTEPSSPSSSPPCSSSTSPSSPS 267
Query: 109 GSSSLLPSPTTPSTLFSRL 127
+++ P+P TP TL + L
Sbjct: 268 SATAAKPTPLTPPTLAAAL 324
>TC11788 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial
(15%)
Length = 469
Score = 32.0 bits (71), Expect = 0.069
Identities = 19/41 (46%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +3
Query: 87 PGASPSSKSRNSSFPSSP--VSGSGSSSLLPSPTTPSTLFS 125
P P + S + PS+P SGS S SL P PT P +LFS
Sbjct: 195 PTPPPLTASPPRTSPSTPRATSGSASLSLPPPPTPPRSLFS 317
Score = 25.4 bits (54), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +3
Query: 91 PSSKSRNSSFPSSPVSGSGSSSLLPSPTTPS 121
P + R+ SS +G +S LL SPTTPS
Sbjct: 288 PPTPPRSLFSCSSTAAGLPTSPLLHSPTTPS 380
>CB826709
Length = 432
Score = 31.2 bits (69), Expect = 0.12
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -3
Query: 91 PSSKSRNSSFPSSPVSGSGSSSLLPSPTTPST 122
PS+ + NSS+ S S SS PSP+TPS+
Sbjct: 430 PSASAANSSYSCSSTLPSAFSSSAPSPSTPSS 335
>TC17395 similar to UP|Q9LN83 (Q9LN83) T12C24.17, partial (37%)
Length = 570
Score = 31.2 bits (69), Expect = 0.12
Identities = 21/47 (44%), Positives = 28/47 (58%), Gaps = 5/47 (10%)
Frame = +3
Query: 87 PGASPSSKSRNSSFPSSPV--SGSGSSSLLPSPTT---PSTLFSRLT 128
P ASPS S +SS S P + SG+SS + SP+T P ++FS T
Sbjct: 75 PSASPSPSSASSSASSPPFRSASSGASSPVASPSTSSPPPSVFSSPT 215
Score = 25.0 bits (53), Expect = 8.5
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 87 PGASPSSKSRNSSFPSSPVSGSGSS--SLLPSPTTPSTLFSRLTIMEDEKKQGSVINEIN 144
P ASPS+ S S SSP S S S S SP + TL T + + S ++ +
Sbjct: 159 PVASPSTSSPPPSVFSSPTSPSASPPISTSSSPCSSVTLPCSFTAPDAASSRSSSVSATS 338
Query: 145 I 145
+
Sbjct: 339 L 341
>TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 808
Score = 30.8 bits (68), Expect = 0.15
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = -2
Query: 93 SKSRNSSFPSSPVSGSGSSSLLPSPTTPSTLFSRLTIMEDEKKQGSVINEINI 145
+K + PSS S S L P +T +T RLT KQG ++ + NI
Sbjct: 531 NKPPKKTLPSSVSSSSTVRLLEPGASTTTTKLLRLTAPRISNKQGPIVTDQNI 373
>TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein, partial
(15%)
Length = 521
Score = 30.8 bits (68), Expect = 0.15
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -2
Query: 74 LEIVKPNLQYHKQ-PGASPSSKSRNSSFPSSPVSGSGSSSLLPSPTTPSTL 123
+E++ ++Y+ P S SS S +S SS S S SSS LPS ++PS+L
Sbjct: 352 MELLHKLIEYYTPLPPCS*SSSSSSSREASSGSSPS*SSSSLPSESSPSSL 200
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 30.4 bits (67), Expect = 0.20
Identities = 18/34 (52%), Positives = 21/34 (60%)
Frame = -3
Query: 89 ASPSSKSRNSSFPSSPVSGSGSSSLLPSPTTPST 122
+S SS S +SS PSS S S SSS S T+ ST
Sbjct: 305 SSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSST 204
Score = 27.3 bits (59), Expect = 1.7
Identities = 19/34 (55%), Positives = 21/34 (60%)
Frame = -3
Query: 89 ASPSSKSRNSSFPSSPVSGSGSSSLLPSPTTPST 122
AS SS S +SS SSP S S SSS S T+ ST
Sbjct: 314 ASTSSSSSSSSSSSSPSSSSSSSS-SSSSTSSST 216
>TC18669 similar to UP|Q93Y39 (Q93Y39) ATP-dependent RNA helicase
(Fragment), partial (3%)
Length = 461
Score = 30.4 bits (67), Expect = 0.20
Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 97 NSSFPSSP-VSGSGSSSLLPSPTTPS 121
+SSF SP VS SG+SSLL +P+TPS
Sbjct: 45 SSSFTISPSVSTSGTSSLLRAPSTPS 122
>BP058233
Length = 548
Score = 30.4 bits (67), Expect = 0.20
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 6/49 (12%)
Frame = +3
Query: 78 KPNLQYHKQPGASPSSKSRNSSFPSSPVSG------SGSSSLLPSPTTP 120
K + Q+ P A S + ++ S P+SG SG++S+ P+PT+P
Sbjct: 321 KRSXQHRPPPSARSSPSTSSAPRASPPISGTPSAAASGTTSISPTPTSP 467
>BP048381
Length = 513
Score = 30.0 bits (66), Expect = 0.26
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 112 SLLPSPTTPSTLFSRLTIMEDEKKQGSVINEINIEE-EEKAIKERRFYLHP 161
SL PS P F+++ I + + Q V N+++ E EK I RFYLHP
Sbjct: 167 SLEPSILAPH--FAKIYITKTKDTQLHVRNQVSTESYSEKDIYMHRFYLHP 313
>BP085186
Length = 388
Score = 30.0 bits (66), Expect = 0.26
Identities = 18/37 (48%), Positives = 22/37 (58%)
Frame = +3
Query: 89 ASPSSKSRNSSFPSSPVSGSGSSSLLPSPTTPSTLFS 125
+S S+ S +SS SS S S SSS PSP+ S L S
Sbjct: 186 SSGSASSSSSSSSSSSSSSSSSSSSFPSPSALSGLIS 296
>TC15694 weakly similar to UP|Q8W042 (Q8W042) Prenylated Rab receptor 2,
partial (46%)
Length = 458
Score = 30.0 bits (66), Expect = 0.26
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Frame = +3
Query: 79 PNLQYHKQPGASPSSKSRNSSFPSSPVSGSGSSSLLPSP---TTPS 121
PNL+ QP A+ S S S +SP + G SSL P TPS
Sbjct: 162 PNLRSQPQPSATSSLASPPPSAKASPTAARGRSSLTAPPCHGLTPS 299
>BP038942
Length = 617
Score = 29.6 bits (65), Expect = 0.34
Identities = 17/35 (48%), Positives = 21/35 (59%)
Frame = +1
Query: 90 SPSSKSRNSSFPSSPVSGSGSSSLLPSPTTPSTLF 124
+PS SR SSF S+P S + S+ SPT TLF
Sbjct: 442 TPSRLSRLSSFTSNPSSVTSLSTKPSSPTLTPTLF 546
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,409,440
Number of Sequences: 28460
Number of extensions: 46281
Number of successful extensions: 762
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of query: 190
length of database: 4,897,600
effective HSP length: 85
effective length of query: 105
effective length of database: 2,478,500
effective search space: 260242500
effective search space used: 260242500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148755.1