BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148654.4 + phase: 0
(246 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071119 51 2e-07
AV780545 38 0.001
TC11752 30 0.50
AV426624 27 2.5
TC8481 similar to UP|Q9XEY0 (Q9XEY0) Nt-gh3 deduced protein, par... 27 3.2
CB826882 26 5.5
BP052646 26 5.5
TC10542 similar to GB|AAB58901.1|2160692|ATU73527 B'''' regulato... 26 5.5
BI418736 26 7.2
TC11385 similar to UP|Q944Q7 (Q944Q7) At1g54990/F14C21_5, partia... 26 7.2
BP075420 25 9.4
BP053291 25 9.4
AV408845 25 9.4
BP048314 25 9.4
>BP071119
Length = 412
Score = 51.2 bits (121), Expect = 2e-07
Identities = 21/51 (41%), Positives = 34/51 (66%)
Frame = +2
Query: 17 LRESGLHDLVYLGYATVPHALLMTLCEMWHPETSTFHMPLGEMTVTLDDVA 67
+ +GL ++ +V +++ E WHPETS+FH+P GEMT+TL+DV+
Sbjct: 257 VHNAGLRWVMKCTSPSVDQSIISAFVERWHPETSSFHLPWGEMTITLEDVS 409
>AV780545
Length = 555
Score = 38.1 bits (87), Expect = 0.001
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 32 TVPHALLMTLCEMWHPETSTFHMPLGEMTVTL 63
++ + L+ L E W ET+TFH+ +GEMTVTL
Sbjct: 460 SLDNPLISALVERWRRETNTFHLNVGEMTVTL 555
>TC11752
Length = 807
Score = 29.6 bits (65), Expect = 0.50
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +3
Query: 26 VYLGYATVP----HALLMTLCEMWHPETSTFHMPLG 57
+++ YA +P H LL+ C++W PE F + LG
Sbjct: 621 IFMFYAVLPFV*NHDLLIACCDLWLPEVFIFCLCLG 728
>AV426624
Length = 422
Score = 27.3 bits (59), Expect = 2.5
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 223 LLTVRKLIFYFFVNFYFFCYIF 244
L+ + LIF+FF F+FF + F
Sbjct: 419 LMNLEALIFFFFFFFFFFFFFF 354
>TC8481 similar to UP|Q9XEY0 (Q9XEY0) Nt-gh3 deduced protein, partial (76%)
Length = 1713
Score = 26.9 bits (58), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (52%)
Frame = -2
Query: 89 KGATLLMRHLGVSQQEAEKICGQEYGGYISYPSLMDFYTTYLGRANL 135
KG T+ RH +++ K ++ ++ Y + ++ T +LGR N+
Sbjct: 1598 KGITV*QRHSQKEKKKKNKTSKRKNSAFLKYQTTLNADTFWLGRENI 1458
>CB826882
Length = 364
Score = 26.2 bits (56), Expect = 5.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 34 PHALLMTLCEMWHPETSTFH 53
P LL T+C HPET +FH
Sbjct: 146 PGILL*TICHTPHPETWSFH 87
>BP052646
Length = 514
Score = 26.2 bits (56), Expect = 5.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 34 PHALLMTLCEMWHPETSTFH 53
P LL T+C HPET +FH
Sbjct: 217 PGILL*TICHTPHPETWSFH 276
>TC10542 similar to GB|AAB58901.1|2160692|ATU73527 B'''' regulatory subunit
of PP2A {Arabidopsis thaliana;}, partial (14%)
Length = 515
Score = 26.2 bits (56), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 206 LAEACRPGDRALGGSVTLLTVRKLIFYFFVNFYF 239
+ + C P L G++TLL F+F V+F+F
Sbjct: 262 IGDKCAP---RLFGAITLLVSSSSYFFFLVSFFF 354
>BI418736
Length = 544
Score = 25.8 bits (55), Expect = 7.2
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = +1
Query: 49 TSTFHMPLGEMTVTLDDVACLTHLPIEGRMLSHEKKMLKHKGATLL 94
T TFH PLG T+ + A + H+ + +H K KG+TL+
Sbjct: 217 TFTFHRPLGRPTIFTGNPATVQHI-----LKTHFSKY--QKGSTLV 333
>TC11385 similar to UP|Q944Q7 (Q944Q7) At1g54990/F14C21_5, partial (12%)
Length = 448
Score = 25.8 bits (55), Expect = 7.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 224 LTVRKLIFYFFVNFYFFCY 242
L V KL+++FF F+FFCY
Sbjct: 182 LWVFKLVWFFFF-FFFFCY 129
>BP075420
Length = 366
Score = 25.4 bits (54), Expect = 9.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 228 KLIFYFFVNFYFFC 241
+L FYFF+N +FC
Sbjct: 99 RLYFYFFLNILYFC 58
>BP053291
Length = 412
Score = 25.4 bits (54), Expect = 9.4
Identities = 12/29 (41%), Positives = 14/29 (47%)
Frame = +1
Query: 46 HPETSTFHMPLGEMTVTLDDVACLTHLPI 74
H TS H +TV L C THLP+
Sbjct: 145 HTLTSNPHSSSSIITVALGS*TCCTHLPV 231
>AV408845
Length = 429
Score = 25.4 bits (54), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 224 LTVRKLIFYFFVNFYFFCYIF 244
L KL F+FF F+FF + F
Sbjct: 74 LQTYKLAFFFFFFFFFFFFFF 136
>BP048314
Length = 394
Score = 25.4 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 220 SVTLLTVRKLIFYFFVNFYFFCYIF 244
S T+LT F+FF F+FF + F
Sbjct: 264 SQTILTHCFFFFFFFFFFFFFFFFF 190
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.142 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,106,027
Number of Sequences: 28460
Number of extensions: 75231
Number of successful extensions: 795
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of query: 246
length of database: 4,897,600
effective HSP length: 88
effective length of query: 158
effective length of database: 2,393,120
effective search space: 378112960
effective search space used: 378112960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148654.4