Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148653.2 + phase: 0 
         (117 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8536 weakly similar to UP|AAR92224 (AAR92224) Cystatin, partia...   134  3e-33
TC15594 similar to UP|CYTI_VIGUN (Q06445) Cysteine proteinase in...    69  2e-13
TC8168 similar to UP|O04720 (O04720) Cysteine proteinase inhibit...    68  5e-13
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    27  0.90
TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3,...    26  1.5
BI419979                                                               25  3.4
TC11370 similar to UP|Q8L539 (Q8L539) 5-formyltetrahydrofolate c...    24  5.8
BP048729                                                               24  7.6
TC14607                                                                24  7.6
TC17291 similar to UP|Q8LG11 (Q8LG11) Proline-rich cell wall pro...    23  9.9
AV418977                                                               23  9.9
TC10393                                                                23  9.9
AV428920                                                               23  9.9

>TC8536 weakly similar to UP|AAR92224 (AAR92224) Cystatin, partial (69%)
          Length = 543

 Score =  134 bits (338), Expect = 3e-33
 Identities = 67/112 (59%), Positives = 86/112 (75%), Gaps = 3/112 (2%)
 Frame = +1

Query: 8   LVLLFVVVLFSYAAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAKLKFEKVI 67
           L++L  V  FS A  +     GG++PI D+NDPHV EIANFAV+EYD++SGAKL+  KV+
Sbjct: 82  LLILSAVSGFSAALRQKGAFVGGYTPIKDLNDPHVKEIANFAVSEYDKQSGAKLRLVKVV 261

Query: 68  NGESQVVAGTNYRLTLSASDGSYS---KNYEAVVWEKIWQHFRNLTSFVPVH 116
           +G+SQVVAGTNYRL ++A  GS S    NYEA+V+E+ W+HFRNLTSF PVH
Sbjct: 262 SGDSQVVAGTNYRLVIAAKGGSRSAAASNYEALVYERSWEHFRNLTSFKPVH 417


>TC15594 similar to UP|CYTI_VIGUN (Q06445) Cysteine proteinase inhibitor
           (Cystatin), complete
          Length = 703

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = +2

Query: 27  APGGWSPID-DINDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNYRLTLSA 85
           A GG S +  + N   +  +A FAV E++++    L+F KV++   QVVAGT Y++ L  
Sbjct: 170 AVGGASEVPGNQNSLEIENLARFAVEEHNKKQNTLLEFGKVVSATQQVVAGTLYKIKLEV 349

Query: 86  SDGSYSKNYEAVVWEKIWQHFRNLTSF 112
           +DG   + YEA +WEK W +F+ L  F
Sbjct: 350 NDGGKKQVYEAKIWEKPWLNFKELQEF 430


>TC8168 similar to UP|O04720 (O04720) Cysteine proteinase inhibitor,
           partial (55%)
          Length = 808

 Score = 67.8 bits (164), Expect = 5e-13
 Identities = 33/78 (42%), Positives = 46/78 (58%)
 Frame = +1

Query: 38  NDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNYRLTLSASDGSYSKNYEAV 97
           N   +  +A FAV E++ +  A L+F +V+  + QVVAG+ + LTL A DG   K YEA 
Sbjct: 349 NSLEIDALARFAVDEHNNKQNALLEFGRVVKAQEQVVAGSMHHLTLEAIDGGEKKIYEAK 528

Query: 98  VWEKIWQHFRNLTSFVPV 115
           VW K W +F+ L  F  V
Sbjct: 529 VWVKSWLNFKELQEFKEV 582


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 26.9 bits (58), Expect = 0.90
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -2

Query: 6   LLLVLLFVVVLFSYAAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAKL---K 62
           + ++ LF+++ F +    N+     W  +  +N+P +      AV E+D     K+    
Sbjct: 293 IFIIFLFIIIFFFFIVGLNRLGRAIWVNLRIMNEPSLK-----AVMEFDEAVKTKVVR*L 129

Query: 63  FEKVINGES 71
              V+ GES
Sbjct: 128 DNHVVGGES 102


>TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3, P1 clone:
           MCB17, partial (12%)
          Length = 468

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 66  VINGESQVVAGTNYRLTLSASDGSYSKNYEAVVWEKIWQHFR 107
           VI GES+V A       +   DGS  ++ EAV W   W   R
Sbjct: 445 VIRGESEVGADA----AVGEDDGSALEHVEAVGWRGWWAALR 332


>BI419979 
          Length = 495

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (43%)
 Frame = +3

Query: 36 DINDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNYRLTLSASDGSYS 91
          +++ PH     N AVT + +R+ + ++F    N         N   + S S G YS
Sbjct: 45 NLHHPHRLHHLNLAVTNFTKRTSSTIRFASSTN--------QNQSSSSSPSPGLYS 188


>TC11370 similar to UP|Q8L539 (Q8L539) 5-formyltetrahydrofolate cycloligase 
           , partial (65%)
          Length = 653

 Score = 24.3 bits (51), Expect = 5.8
 Identities = 11/17 (64%), Positives = 15/17 (87%)
 Frame = -2

Query: 2   RNPTLLLVLLFVVVLFS 18
           R+  LLL+LLFVVV+F+
Sbjct: 115 RSSWLLLLLLFVVVIFN 65


>BP048729 
          Length = 543

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 66  VINGESQVVAGTNYRLTLSASDGSYSKNYEAVVWEKIW 103
           V N   Q     NY+L  + +DG  S +    +  KIW
Sbjct: 307 VPNLGKQKTRSNNYKLLSAVTDGHCSGSVAVSIGRKIW 194


>TC14607 
          Length = 582

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 15/47 (31%), Positives = 29/47 (60%), Gaps = 3/47 (6%)
 Frame = -1

Query: 70  ESQVVAGTNYRLTLSASDGSYSKNYE-AVVWEKIWQ--HFRNLTSFV 113
           ES+++  +N+R+ L + +  + K Y+ AV+WEK +   H ++ T  V
Sbjct: 417 ESKIMGASNHRM-LPSYNTHFHKIYKLAVLWEKAYMSLHSQHQTMIV 280


>TC17291 similar to UP|Q8LG11 (Q8LG11) Proline-rich cell wall protein-like,
           partial (33%)
          Length = 429

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 19  YAAARNQFAPGGWSPI 34
           Y   R   APGGW PI
Sbjct: 223 YDEGRPTAAPGGWGPI 176


>AV418977 
          Length = 415

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = +2

Query: 70  ESQVVAGTNYRLTLSASDGSYSKNYEAVVWE 100
           +  +VAGT  RL L    G YS      +WE
Sbjct: 209 DGYLVAGTQKRLFLVGRIGLYSTLQSMRIWE 301


>TC10393 
          Length = 1063

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 10/13 (76%), Positives = 12/13 (91%)
 Frame = -3

Query: 5   TLLLVLLFVVVLF 17
           TLLL LLFV+V+F
Sbjct: 146 TLLLYLLFVIVIF 108


>AV428920 
          Length = 439

 Score = 23.5 bits (49), Expect = 9.9
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 69  GESQVVAGTNYRLTLSASDGSYSKNYEAVVWEKIWQHFRNLTSFVPVH 116
           GE  +  GT   ++   SD  ++  +  ++ + IW+ F     F P H
Sbjct: 271 GEEDIYHGTPIYISTWRSDTLWTW*WVFILHDGIWRRFX*SIQFCPKH 414


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,036,018
Number of Sequences: 28460
Number of extensions: 21426
Number of successful extensions: 108
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of query: 117
length of database: 4,897,600
effective HSP length: 78
effective length of query: 39
effective length of database: 2,677,720
effective search space: 104431080
effective search space used: 104431080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)


Medicago: description of AC148653.2