TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148652.2 - phase: 0 /pseudo
         (1145 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                              128  4e-30
BI417841                                                               70  1e-12
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi...    64  1e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ...    57  2e-08
AV427422                                                               56  4e-08
TC18698                                                                53  2e-07
AV410603                                                               52  5e-07
BF177840                                                               49  6e-06
TC10159                                                                31  1.3
TC9021 similar to UP|Q8H0G9 (Q8H0G9) MCM protein-like protein, p...    28  8.2
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p...    28  8.2

>BG662087 
          Length = 373

 Score =  128 bits (322), Expect = 4e-30
 Identities = 62/119 (52%), Positives = 83/119 (69%)
 Frame = +1

Query: 154 GKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 213
           GK RM VD+ DL KA PKD++PLP ID LVD  + +++ S MD +SGY+QIKM P D +K
Sbjct: 16  GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195

Query: 214 TSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQH 272
           T+F+T    +CY+ +PFGL NAGATY   M  +F D + + +EVY+D+MIVKS     H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>BI417841 
          Length = 617

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 39/131 (29%), Positives = 63/131 (47%), Gaps = 2/131 (1%)
 Frame = +1

Query: 566 LVFDGDV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 623
           L FDG    N    G GAV+ +  G  + +    +   TNN AEY   I G++ A +   
Sbjct: 142 LEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHAHEQGY 318

Query: 624 KHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 683
           +H+N+ GDS LV  Q++G W+  +  +    + A+ L + F   +++H+PR  N  AD  
Sbjct: 319 QHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEADVQ 498

Query: 684 GTISSMFRVNH 694
             +       H
Sbjct: 499 ANLGVNLPAGH 531


>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
            (Fragment), partial (10%)
          Length = 572

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 36/96 (37%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
 Frame = +2

Query: 928  DNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQK-IVQKMVTTYKDWHE 986
            +NG    +   Q  C+   I+   SS   PQ NG  EAANK I K I +++      W +
Sbjct: 8    ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187

Query: 987  MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 1022
             LP  L  Y T  +SS   TPF L YG + +LP+E+
Sbjct: 188  ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295


>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
          Length = 632

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/91 (30%), Positives = 43/91 (46%)
 Frame = +2

Query: 608 YEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKV 667
           Y   I G++ AI    KH+ + GDS LV NQ++G W+  +  +      A+ L   F   
Sbjct: 2   YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181

Query: 668 ELHHIPRDENQMADALGTISSMFRVNHWNDV 698
           +++HIPR+ N  AD         R     +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274


>AV427422 
          Length = 417

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 33/133 (24%), Positives = 64/133 (47%), Gaps = 2/133 (1%)
 Frame = +1

Query: 877  SNGHRFILVAIDYYTKWVEAASYAN-VTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNN 935
            S G+  +LV +D  +K+       +  T +V+A      ++  +GVP  I++D      +
Sbjct: 19   SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198

Query: 936  NVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHG 994
            N  + L +    +  +S+ Y P+ +G  E  N+ ++  ++  +    K W   +P+A + 
Sbjct: 199  NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378

Query: 995  YRTTVRSSTGATP 1007
            Y T+   STG TP
Sbjct: 379  YNTSYHVSTGQTP 417


>TC18698 
          Length = 808

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 30/62 (48%), Positives = 37/62 (59%)
 Frame = -2

Query: 211 REKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEE 270
           ++KT+       + Y+VMP GL N   TY R M  +FH  I K VEVYV+DMIVKS  E 
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628

Query: 271 QH 272
            H
Sbjct: 627 FH 622


>AV410603 
          Length = 162

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +1

Query: 171 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFIT 218
           KD+FP+P +D L+D    S+ FS +D  SGY+QI + PEDR KT F T
Sbjct: 10  KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRT 153


>BF177840 
          Length = 410

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 26/101 (25%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 923  SKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVT-TY 981
            + I++D  T   ++  + L  +   +   S+   PQ +G  E  NK +  +++ ++    
Sbjct: 11   TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190

Query: 982  KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 1022
            K W   LP+    Y   V S+T  +PF +VYG   + PL++
Sbjct: 191  KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313


>TC10159 
          Length = 543

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/93 (20%), Positives = 43/93 (45%), Gaps = 1/93 (1%)
 Frame = +2

Query: 94  EHRIPTKPEYPPVRQKLRRTHPDM-ALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKK 152
           E ++    EY  +  ++RR  P++ ++ + +E+Q+ ID     T EYP W  +   + ++
Sbjct: 8   EMKVVEFEEYMQLADRIRRHFPNLNSIWLSTEMQQVID----QTREYPNWNFHYTKIRRQ 175

Query: 153 DGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDN 185
                   D+   +      N+P+ +  +  D+
Sbjct: 176 VKTNMSMADYEASLGRETSTNYPMANFLMAADS 274


>TC9021 similar to UP|Q8H0G9 (Q8H0G9) MCM protein-like protein, partial
           (13%)
          Length = 604

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 968 KNIQKIVQKMVTTYKDWHEMLPYAL 992
           K +QK  +K +T  KD+HE+L Y L
Sbjct: 96  KALQKSFRKYITFKKDYHELLHYLL 170


>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
           (85%)
          Length = 1917

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 17/59 (28%), Positives = 28/59 (46%)
 Frame = +2

Query: 719 INRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDILYKRNYD 777
           +   +G  VDD+ WY    Q    RE      NK +++++  A ++   G  LY +N D
Sbjct: 536 VESLNGKKVDDKEWYVGKAQKKSEREQE--LKNKFEQSMKEAADKY--QGANLYVKNLD 700


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,654,248
Number of Sequences: 28460
Number of extensions: 277679
Number of successful extensions: 1267
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of query: 1145
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1045
effective length of database: 2,051,600
effective search space: 2143922000
effective search space used: 2143922000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)