TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148652.15 + phase: 0 /pseudo
         (121 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19808 homologue to UP|Q9LH76 (Q9LH76) Genomic DNA, chromosome ...    43  1e-05
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-...    37  0.001
TC8934 similar to GB|AAQ22601.1|33589670|BT010132 At2g27890 {Ara...    26  2.1
BP084505                                                               25  3.6
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li...    25  4.7
BP035940                                                               25  4.7
TC16859 weakly similar to UP|Q8W3M4 (Q8W3M4) Extensin-like prote...    24  8.1

>TC19808 homologue to UP|Q9LH76 (Q9LH76) Genomic DNA, chromosome 3, BAC
           clone: T21E2 (AT3g14790/T21E2_4), partial (19%)
          Length = 515

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +2

Query: 1   MHFAAQTHVDNSYENSFEFTQTS 23
           MHFAAQTHVDNS+ NSFEFT+ +
Sbjct: 395 MHFAAQTHVDNSFGNSFEFTKNN 463


>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
           protein, partial (97%)
          Length = 2230

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 26/106 (24%), Positives = 42/106 (39%)
 Frame = +3

Query: 1   MHFAAQTHVDNSYENSFEFTQTSFMELMSFRSLQVSKNQVKGFIHVSTDKFYGETDENAV 60
           MH AAQ  V  + EN   +  ++   L++      S N     +  S+   YG  ++   
Sbjct: 663 MHLAAQAGVRYAMENPHSYVHSNIAALVTLMEACKSANPQPAIVWASSSSVYGLNEKVPF 842

Query: 61  VGNHEASQLLETNPYSAMKIGAEMLVMSYGRSYGLPVITTRGDRVY 106
             +    Q    + Y+A K   E +  +Y   YGL +   R   VY
Sbjct: 843 SESDRTDQ--PASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVY 974


>TC8934 similar to GB|AAQ22601.1|33589670|BT010132 At2g27890 {Arabidopsis
           thaliana;}, partial (9%)
          Length = 601

 Score = 25.8 bits (55), Expect = 2.1
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -3

Query: 3   FAAQTHVDNSYENSFEFTQTSFMELMSFR-----SLQVSKNQVKGFIHVSTDKFYGETDE 57
           F +   VD S   +F   +     +  FR     SL  S N ++  +H+   K     D+
Sbjct: 251 FHSSNKVDQSNNLAFTVFRVCSCPVYIFRLGKVISLNESFNHLQLGLHIQRHKMM*PIDQ 72

Query: 58  NAVVGNHEASQLLETN 73
           N  +  HE+S  + T+
Sbjct: 71  NLQIQ*HESSSFITTS 24


>BP084505 
          Length = 291

 Score = 25.0 bits (53), Expect = 3.6
 Identities = 15/51 (29%), Positives = 23/51 (44%)
 Frame = +3

Query: 34  QVSKNQVKGFIHVSTDKFYGETDENAVVGNHEASQLLETNPYSAMKIGAEM 84
           +VS ++     HVS   FY +T    +  N   S  L+   Y+  KI  E+
Sbjct: 93  KVSFHRAPNLYHVSAHNFYLQTSVTNMKTNKNKSLKLKIRSYALAKI*KEI 245


>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein 2
            precursor (Phytocyanin-like protein), partial (31%)
          Length = 1482

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 22   TSFMELMSFRSLQVSKNQVKGFI 44
            T F+  ++F +LQ SKN +KG +
Sbjct: 1468 TMFLYFLTFPTLQQSKNIIKGSV 1400


>BP035940 
          Length = 396

 Score = 24.6 bits (52), Expect = 4.7
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = +2

Query: 16  SFEFTQTSFMELMSFRS 32
           SF+FT +SF+ L SFR+
Sbjct: 329 SFDFTASSFVALSSFRT 379


>TC16859 weakly similar to UP|Q8W3M4 (Q8W3M4) Extensin-like protein,
          partial (13%)
          Length = 745

 Score = 23.9 bits (50), Expect = 8.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 42 GFIHVSTDKFYGETDENAVV 61
          GF++++ +KFYG+  E+  V
Sbjct: 2  GFLNLAQNKFYGKVPESVCV 61


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,675,464
Number of Sequences: 28460
Number of extensions: 14743
Number of successful extensions: 64
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of query: 121
length of database: 4,897,600
effective HSP length: 79
effective length of query: 42
effective length of database: 2,649,260
effective search space: 111268920
effective search space used: 111268920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)