TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148651.6 + phase: 0 /pseudo
         (514 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP056651                                                               39  0.003
TC19992 similar to UP|Q8LE45 (Q8LE45) Nodulin-like protein, part...    30  1.2

>BP056651 
          Length = 564

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +1

Query: 7   CVCGDFNAIRSSEERRSVAAGQVSS---DFSHFNAFIDNNVLVDLPLGGVILRGSREMVS 63
           C+ GDFN++R SEERR    G+ SS   +   FN FID    +  P     + G   M  
Sbjct: 313 CMAGDFNSVRRSEERRG-THGEGSSGAGEMEEFNDFIDEWNWMTSP*WVENILGFDRMEK 489

Query: 64  R*VVLIGSCYQRIGVWSG*IV 84
           + VV I S Y   G+  G IV
Sbjct: 490 QEVVWIDSWYLINGILLGLIV 552


>TC19992 similar to UP|Q8LE45 (Q8LE45) Nodulin-like protein, partial (46%)
          Length = 615

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 406 SYWIRCFGCSVSVC*KQTNSGWYSC 430
           S WIR +GCSV  C +Q N    SC
Sbjct: 70  SIWIRRYGCSVQGCIEQWNEQLCSC 144


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.170    0.666 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,240
Number of Sequences: 28460
Number of extensions: 162685
Number of successful extensions: 1700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 1011
length of query: 514
length of database: 4,897,600
effective HSP length: 94
effective length of query: 420
effective length of database: 2,222,360
effective search space: 933391200
effective search space used: 933391200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 57 (26.6 bits)