TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148651.5 + phase: 0 
         (496 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV419448                                                               29  1.5
AV413126                                                               29  2.0
BP040759                                                               28  4.5
BP073073                                                               27  7.7
TC17796 similar to PIR|T10625|T10625 reticuline oxidase homolog ...    27  7.7
TC12909                                                                27  7.7

>AV419448 
          Length = 382

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 141 VPLGLNEFKSRAISSKVKSGTGQSRSVIHRLEPG 174
           VPL ++ FKS  ++S   S +    +++H+L PG
Sbjct: 232 VPLTVSNFKSLCLASSDPSSSSYKNTLVHKLFPG 333


>AV413126 
          Length = 370

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = -2

Query: 234 TIEIANFEHHSSNLKDFEIHGSLNFPTNV 262
           T  I NF      + DF +HG + FPTN+
Sbjct: 177 TTPIQNFPIPCFLVPDFAVHGGIKFPTNI 91


>BP040759 
          Length = 482

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 298 HYGSEFYCTLSVVEVFGVDAVERMLEDLINTQDNLLASGEGNADKTILPHPDPAVIEHVH 357
           H+   F+ TL  ++V     + R+   L      +LAS     +K    +P P V  H H
Sbjct: 193 HHQRAFHFTLRTIQVMK*VTILRIA--LGANHQPVLASSFPQRNKRTSHYPAPWVEVHSH 366

Query: 358 KKPLEGINSVPA-SDISSSKH 377
           + P   +  VP+ SD S + H
Sbjct: 367 QAPSTALVPVPSQSDTSYAAH 429


>BP073073 
          Length = 490

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 471 ASDLISWKSQVSSQLNHLIQD 491
           +SD +SWK    S+LNH + D
Sbjct: 188 SSDQVSWKCNCCSKLNHSVTD 126


>TC17796 similar to PIR|T10625|T10625 reticuline oxidase homolog F21C20.180
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (35%)
          Length = 594

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 153 ISSKVKSGTGQSRSVIHRLEPGGAEYNYASASKGAKVLGSNKE 195
           ISSKV  GT   R+ +  +  GGA    +   K   VLG  KE
Sbjct: 445 ISSKVVKGTKTGRATVIAMFLGGANEVVSILGKEFPVLGLKKE 573


>TC12909 
          Length = 609

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 223 IMELSEETLVDTIEIANFEHHSSNLKDFEIHGSLNFPTNV 262
           + ++S E + + + +      S NLK+ +I GS N PT +
Sbjct: 39  LYQVSFEDMKEILVVLRLITSSPNLKELQISGSSNIPTAI 158


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,830,234
Number of Sequences: 28460
Number of extensions: 100202
Number of successful extensions: 418
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of query: 496
length of database: 4,897,600
effective HSP length: 94
effective length of query: 402
effective length of database: 2,222,360
effective search space: 893388720
effective search space used: 893388720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)