TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148651.4 + phase: 0 /pseudo
         (764 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8414                                                                 74  7e-14
TC10857                                                                62  3e-10
AV413701                                                               32  0.29
AV419744                                                               30  1.9
TC8401 similar to UP|Q9LFG2 (Q9LFG2) Diaminopimelate epimerase-l...    29  2.5
BP050753                                                               28  5.5
TC15757 weakly similar to GB|AAP37804.1|30725564|BT008445 At2g15...    28  7.2

>TC8414 
          Length = 1363

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 66/247 (26%), Positives = 110/247 (43%), Gaps = 10/247 (4%)
 Frame = +1

Query: 524 TMGSLKHDREWILKSLSGEILTLKRVPEMGLISSFIDLSQGMLFVESPHCKERLQIRLQL 583
           T    + DREW++ +  G+ ++ +  P++ L+   +DL     F E     E   + L+ 
Sbjct: 163 TPAGFRWDREWMVVNSRGKAISQRNEPKLALVH--VDLPNEA-FAEDWQAPEDSFMELKA 333

Query: 584 DFYDSAIQDIELQGQRYKVYSY----------DNETNSWFSKAIERPCTLLRYSGSSHDF 633
                    +  Q +    +S            +E + WFS  + +P  L+R++ +S   
Sbjct: 334 PGMQPLKVCLGKQPELKNGFSVWEWTGSAWDEGSEASQWFSAFLGKPSQLVRFNTASEVR 513

Query: 634 VLDRTKDIVTCKDTNSAVSFANEGQFLLVSEESVSDLNKRLCSDVQMDMCETEIEINTNR 693
            +D   D V     +    F +   FLL S++S++ LN+ L           E  IN NR
Sbjct: 514 QVD--PDYVK---GHHPTLFTDGYPFLLSSQDSLNALNELL-----------EEPININR 645

Query: 694 FRPNLVVSGGRPYDEDGWSDIRIGNKYFRSLGGCNRCQVINLTLNAGQVQKSKEPLATLA 753
           FR N++V G  P+ ED WS+I+IG   F     C RC++         V   +EPL TL 
Sbjct: 646 FRANILVEGCEPFAEDLWSEIKIGRFSFLGSKMCGRCKITTTDQETAIV--GREPLQTLM 819

Query: 754 SYRRVKV 760
           ++R  K+
Sbjct: 820 TFRSGKL 840


>TC10857 
          Length = 566

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 32/72 (44%), Positives = 42/72 (57%)
 Frame = +3

Query: 689 INTNRFRPNLVVSGGRPYDEDGWSDIRIGNKYFRSLGGCNRCQVINLTLNAGQVQKSKEP 748
           I  NRFRPN++V G  P+ ED WS+I+IG   F     C RC+V  +    G     +EP
Sbjct: 9   IRINRFRPNILVEGCEPFSEDLWSEIKIGRFSFLGSKLCGRCKVTTINQETGIA--GREP 182

Query: 749 LATLASYRRVKV 760
           L TLA++R  KV
Sbjct: 183 LETLATFRSGKV 218


>AV413701 
          Length = 416

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 228 VLIDAAKGSATMPPDLSKYPVDFVALSFYKLFGYPTGLGALVVRNDAAKLLKKSYFSGGT 287
           VL+DA +    M  D+    VDF+  S +K+ G PTG+G L  + D    +   +  GG 
Sbjct: 207 VLVDACQSVPHMVVDVQSLNVDFLVASSHKMCG-PTGIGFLYGKIDILSSM-PPFLGGGE 380

Query: 288 VAASI 292
           + + +
Sbjct: 381 MISDV 395


>AV419744 
          Length = 377

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (55%)
 Frame = +3

Query: 387 LASLSGIQLRTGCFCNPGACAKYLGLSHMDLI 418
           L  LS  QL+  C CNPGA  K  G+  + L+
Sbjct: 3   LTILSPRQLKQLCVCNPGAVIKLKGIQGLSLL 98


>TC8401 similar to UP|Q9LFG2 (Q9LFG2) Diaminopimelate epimerase-like
           protein (AT3g53580/F4P12_280), partial (40%)
          Length = 664

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 29/117 (24%), Positives = 45/117 (37%), Gaps = 6/117 (5%)
 Frame = +1

Query: 44  GATLYSELQMESVFKDLTTNVYGNPHSQSDSSAATHDIVRDARQQVLDYCNASPEDYKCI 103
           GA L SEL ++ V  ++T    GNPH  + S   +  ++ D     L      P+     
Sbjct: 4   GAVLISELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVDE----LKLAEIGPKFEH-- 165

Query: 104 FTSGATAALKLVGEAFPWSCNSNFMYTMENHNSVLGIRE------YALGQGAAAIAV 154
                        E FP   N+ F+  + N +  + + E       A G GA A+ V
Sbjct: 166 ------------HEMFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACALVV 300


>BP050753 
          Length = 490

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
 Frame = +2

Query: 610 NSWFSKAIERPCTLL--RYSGSSHDFVLDRTKDIVTCKD 646
           NSWFS    +    +  RY   +H F L+R KD+VT KD
Sbjct: 89  NSWFSLNKSK*EFYIE*RYYIPTHSFELNRKKDLVTRKD 205


>TC15757 weakly similar to GB|AAP37804.1|30725564|BT008445 At2g15890
           {Arabidopsis thaliana;}, partial (67%)
          Length = 913

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 4/39 (10%)
 Frame = +3

Query: 68  PHSQSDSSAATHD--IVRDARQQVLDYCNA--SPEDYKC 102
           P S+S S  A  D  ++  + +++LDYC+A    E Y C
Sbjct: 162 PFSRSKSERAAKDPPLIEKSEKELLDYCSAVEGEESYSC 278


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,584,679
Number of Sequences: 28460
Number of extensions: 168315
Number of successful extensions: 609
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of query: 764
length of database: 4,897,600
effective HSP length: 97
effective length of query: 667
effective length of database: 2,136,980
effective search space: 1425365660
effective search space used: 1425365660
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)