TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148607.14 - phase: 0 
         (359 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14715                                                                95  2e-20
AV419255                                                               28  2.4
TC10764                                                                27  4.1
TC11311 similar to UP|Q9FPH4 (Q9FPH4) AT4g33900, partial (30%)         27  4.1
TC15619 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Cr...    27  4.1
TC11507 weakly similar to UP|Q9HD28 (Q9HD28) Retinitis pigmentos...    27  5.3
TC15544 weakly similar to PIR|E88979|E88979 protein F37B4.8 [imp...    26  9.0
CN825172                                                               26  9.0
TC16252                                                                26  9.0

>TC14715 
          Length = 637

 Score = 94.7 bits (234), Expect = 2e-20
 Identities = 41/56 (73%), Positives = 42/56 (74%)
 Frame = +2

Query: 281 YSAQSPAQSVAGAYPNGPNQWPNYGVQPQTWPATTQAQGQQWPAGYTQQQVNWFFP 336
           YS QSPAQSV GAYPN PNQW NYG QPQTWPA  Q QGQQWPAGY QQ     +P
Sbjct: 5   YSVQSPAQSVMGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYP 172


>AV419255 
          Length = 421

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = +2

Query: 199 ESLVVKFITPNPENPGVASATEREELSNIFLE 230
           ESL  +F+TPN  + G A+  E +    IFLE
Sbjct: 14  ESLPGQFVTPNSPSLGAAAQIEDDFFCGIFLE 109


>TC10764 
          Length = 555

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
 Frame = -3

Query: 318 QGQQWPAGYTQQ---QVNWFFPSTIFLVCCFPSVQ 349
           QG Q P    QQ   Q+N  FP+   LVCC  +V+
Sbjct: 124 QGDQTPHPNAQQLTHQINLDFPTRRLLVCCHVTVK 20


>TC11311 similar to UP|Q9FPH4 (Q9FPH4) AT4g33900, partial (30%)
          Length = 523

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 325 GYTQQQVNWFFPS-TIFLVCCF 345
           GYT   +NWF P   IFL+ CF
Sbjct: 349 GYTTN*INWFHPV*QIFLLICF 414


>TC15619 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked neck)
           protein-like, partial (26%)
          Length = 822

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +3

Query: 102 IIRHANMEHRLGKLEDAFSLYEQAIA---IEKGKEHSQTLPMLFAQYSRFVYLASGNSEK 158
           ++ +  +E  +G  E    +YE+AIA     + K + Q    L+  Y+ +  L +G+ E+
Sbjct: 12  LVDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVER 191

Query: 159 AREI 162
            RE+
Sbjct: 192 TREV 203


>TC11507 weakly similar to UP|Q9HD28 (Q9HD28) Retinitis pigmentosa GTPase
           regulator (Fragment), partial (3%)
          Length = 744

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 84  RAAYQLVHTEISPGLLEAIIRHANMEHRLGKLE 116
           RA Y   HT+ISP LL A+      E R+G +E
Sbjct: 311 RARYTTTHTQISPPLLLAV------ESRIGAVE 231


>TC15544 weakly similar to PIR|E88979|E88979 protein F37B4.8 [imported] -
           Caenorhabditis elegans {Caenorhabditis elegans;} ,
           partial (3%)
          Length = 615

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 14/48 (29%), Positives = 25/48 (51%)
 Frame = +3

Query: 145 YSRFVYLASGNSEKAREILVGGLENASLSKPLLEALLHFEAIQPQPKR 192
           +S+   +A+GN  KAR+ +    ++  LSK      +H  ++ P P R
Sbjct: 195 HSQLTSIANGNGSKARKPISKSAKSPELSK----NSIHSSSLGPSPSR 326


>CN825172 
          Length = 655

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (52%)
 Frame = +3

Query: 278 SRAYSAQSPAQSVAGAYPNGPNQWPNYGVQPQ 309
           SR+ S+ SP+  V    P  P  W N  V+PQ
Sbjct: 99  SRSSSSTSPSVRVEIVSPEQPRCWSNLVVKPQ 194


>TC16252 
          Length = 550

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = -3

Query: 86  AYQLVHTEISPGLLEAIIRHANMEHRLGKLE 116
           A+ L+H+ + PG L+    H N+ H LG+LE
Sbjct: 218 AWNLLHSLVHPG*LDQSCGHRNLLH-LGELE 129


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,107,139
Number of Sequences: 28460
Number of extensions: 82302
Number of successful extensions: 417
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of query: 359
length of database: 4,897,600
effective HSP length: 91
effective length of query: 268
effective length of database: 2,307,740
effective search space: 618474320
effective search space used: 618474320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)