BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148607.1 + phase: 0 /pseudo
(296 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP055095 267 1e-72
AV406931 229 5e-61
BP057421 147 3e-41
AV771159 62 6e-16
AV416268 62 1e-10
BP075566 41 3e-10
AV410765 40 4e-04
BG662257 40 4e-04
AW720269 38 0.002
CB827630 37 0.003
TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti... 36 0.009
CB829290 32 0.098
BP055390 31 0.29
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor... 30 0.37
TC17532 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like prote... 30 0.49
TC15966 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein... 28 1.9
CB828601 26 9.2
>BP055095
Length = 538
Score = 267 bits (683), Expect = 1e-72
Identities = 127/177 (71%), Positives = 149/177 (83%)
Frame = +3
Query: 71 GQKENLITDYVLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEIS 130
GQ+ L+TDY L+VLGL+ICAD ++G+ M R ISGGQKKR+TTGEMLVGP KALFMDEIS
Sbjct: 6 GQRSQLVTDYALKVLGLDICADVMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIS 185
Query: 131 TGLDSSTTFQIVNSMRQYVHILKGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREH 190
TGLDSSTTFQI MRQ VHI+ T+VISLLQP PET+ LFDDIILLS+ I+YQGPRE+
Sbjct: 186 TGLDSSTTFQICKFMRQMVHIMDVTMVISLLQPAPETFELFDDIILLSEGQIVYQGPREN 365
Query: 191 VLEFFESIGFKCPNRKGVADFLQEVTSRKDQEQYWEHKDRPYRFITAEEFSEAFQTF 247
VLEFFE +GFKCP RKG ADFLQEVTS+KDQEQYW KD PYR+++ EF ++F +F
Sbjct: 366 VLEFFEYMGFKCPERKGAADFLQEVTSKKDQEQYWFRKDEPYRYVSVPEFVQSFHSF 536
>AV406931
Length = 438
Score = 229 bits (583), Expect = 5e-61
Identities = 103/145 (71%), Positives = 125/145 (86%)
Frame = +3
Query: 140 QIVNSMRQYVHILKGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREHVLEFFESIG 199
QIV+S+RQYVHIL GT VISLLQP PETY+LFDDIIL+SD ++Y GPRE+VL+FFES+G
Sbjct: 3 QIVSSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 182
Query: 200 FKCPNRKGVADFLQEVTSRKDQEQYWEHKDRPYRFITAEEFSEAFQTFHVGRRLGDELGT 259
FKCP RKG ADFLQEVTS+KDQEQYW +D PYRF+T +F+EAFQ+FH+GR+L +E+
Sbjct: 183 FKCPERKGAADFLQEVTSKKDQEQYWVRRDEPYRFVTVTQFAEAFQSFHIGRKLAEEVAV 362
Query: 260 EFDKSNSHPAALTTKKYGVGKIELL 284
FDK+ SHPAALTTK+YG+ K ELL
Sbjct: 363 PFDKTKSHPAALTTKEYGINKKELL 437
>BP057421
Length = 547
Score = 147 bits (370), Expect(2) = 3e-41
Identities = 68/104 (65%), Positives = 88/104 (84%)
Frame = +3
Query: 48 REKDANIKPDPDIDVYMKAVATEGQKENLITDYVLRVLGLEICADTVVGNAMIRAISGGQ 107
REK+A I P+ ++D++MKA A +G + +LITDY L++LGL+IC DT+VG+ M R +SGGQ
Sbjct: 228 REKEAGIFPEAELDLFMKATALKGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQ 407
Query: 108 KKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHI 151
KKR+TTGEM+VGPTK LFMDEISTGLDSSTTFQIV ++Q VH+
Sbjct: 408 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHL 539
Score = 38.1 bits (87), Expect(2) = 3e-41
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 11 QRNCCLCGSK*SSHWRNDC*RNLGLLS*SPRSW 43
+++C + K S WRNDC RN G LS* PR W
Sbjct: 95 KKDCSIHQPKRCSCWRNDCERNPGFLS*MPRGW 193
>AV771159
Length = 486
Score = 62.4 bits (150), Expect(2) = 6e-16
Identities = 36/101 (35%), Positives = 60/101 (58%)
Frame = -3
Query: 115 EMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHILKGTVVISLLQPPPETYNLFDDI 174
++L+ P+ L +DE ++GLDS+T +I+N++ + + TVV ++ QP Y +FD +
Sbjct: 343 KLLIHPS-LLLLDEPTSGLDSTTALRILNTIPRLATGGR-TVVTTIHQPSSRLYYMFDKV 170
Query: 175 ILLSDSHIIYQGPREHVLEFFESIGFKCPNRKGVADFLQEV 215
+LLS+ IY GP LE+F S+GF AD L ++
Sbjct: 169 VLLSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLLDL 47
Score = 37.4 bits (85), Expect(2) = 6e-16
Identities = 15/42 (35%), Positives = 27/42 (63%)
Frame = -2
Query: 81 VLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTK 122
V+ LGL C +++G ++R ISG +K+R++ G+ P+K
Sbjct: 449 VITELGLSGCRSSMIGGPLLRGISGAEKRRVSIGQETAHPSK 324
>AV416268
Length = 424
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/108 (29%), Positives = 63/108 (57%), Gaps = 2/108 (1%)
Frame = +3
Query: 79 DYVLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTT 138
D+ ++ +GL+ +T +G + +SGGQK+R++ ++ + LF+DE ++GLDS+ +
Sbjct: 96 DFTIKEMGLQDAINTRIGGWGSKGVSGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAAS 275
Query: 139 FQIVN--SMRQYVHILKGTVVISLLQPPPETYNLFDDIILLSDSHIIY 184
+ +++ S ++ T+V S+ QP E + LF + LLS +Y
Sbjct: 276 YHVISRISSLNKKDGIQRTIVASIHQPSNEIFQLFHSLCLLSSGKTVY 419
>BP075566
Length = 253
Score = 40.8 bits (94), Expect(2) = 3e-10
Identities = 18/27 (66%), Positives = 23/27 (84%)
Frame = -2
Query: 103 ISGGQKKRLTTGEMLVGPTKALFMDEI 129
+SGGQKKR+TTGEM+VGPT+ L +I
Sbjct: 81 LSGGQKKRVTTGEMIVGPTQHLLWMDI 1
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 17/37 (45%), Positives = 26/37 (69%)
Frame = -1
Query: 65 KAVATEGQKENLITDYVLRVLGLEICADTVVGNAMIR 101
+ +G + +LITDY L +LGL+IC DT++G+ M R
Sbjct: 196 RLTXVKGTETSLITDYTLTLLGLDICKDTLLGDDMHR 86
>AV410765
Length = 167
Score = 40.4 bits (93), Expect = 4e-04
Identities = 21/47 (44%), Positives = 28/47 (58%)
Frame = +3
Query: 250 GRRLGDELGTEFDKSNSHPAALTTKKYGVGKIELLKACSSTEYLLIE 296
G +L EL FDKS++H AAL K V ++ KAC E+LLI+
Sbjct: 3 GVQLESELSVPFDKSSAHKAALVYTKNSVPTKDIFKACWDKEWLLIQ 143
>BG662257
Length = 336
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/68 (33%), Positives = 41/68 (59%)
Frame = +1
Query: 92 DTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHI 151
DTVVG+ I+ +SGGQK+R+ +V K L +DE ++ LD+ + ++V V +
Sbjct: 109 DTVVGDRGIQ-LSGGQKQRVAIARAIVKSPKILLLDEATSALDAESE-KVVQDALDRVRV 282
Query: 152 LKGTVVIS 159
+ T+V++
Sbjct: 283 DRTTIVVA 306
>AW720269
Length = 524
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/53 (35%), Positives = 34/53 (63%)
Frame = +3
Query: 81 VLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGL 133
+++ LGL +D+ VG+ R ISGG++KR++ G ++ L +DE ++GL
Sbjct: 366 LMQELGLFHVSDSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGL 524
>CB827630
Length = 405
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 104 SGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMR 146
SGG K+RL L+G + ++MDE STGLD ++ + N ++
Sbjct: 140 SGGMKRRLIVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVK 268
>TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
(9%)
Length = 712
Score = 35.8 bits (81), Expect = 0.009
Identities = 27/101 (26%), Positives = 50/101 (48%)
Frame = +2
Query: 92 DTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHI 151
DTVVG +SGGQK+R+ ++ L +DE ++ LD+ + ++V V +
Sbjct: 77 DTVVGERGT-LLSGGQKQRVAIARAIIKTPNILLLDEATSALDAESE-RVVQDALDKVMV 250
Query: 152 LKGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREHVL 192
+ TV+++ T D I +L + I+ +G E ++
Sbjct: 251 NRTTVIVA---HRLSTIKNADVITVLKNGVIVEKGRHETLI 364
>CB829290
Length = 546
Score = 32.3 bits (72), Expect = 0.098
Identities = 17/54 (31%), Positives = 32/54 (58%)
Frame = -3
Query: 104 SGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHILKGTVV 157
S GQ++ + G +L+ +K L +DE + +D++T I ++RQ H + TV+
Sbjct: 496 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ--HFSESTVI 341
>BP055390
Length = 488
Score = 30.8 bits (68), Expect = 0.29
Identities = 23/100 (23%), Positives = 46/100 (46%)
Frame = +3
Query: 93 TVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHIL 152
T VG ++ +SGGQK+R+ ++ L +DE ++ LD+ + + ++ +H
Sbjct: 204 TQVGQRGVQ-LSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMH-- 374
Query: 153 KGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREHVL 192
G VI + N D I ++ + ++ G +L
Sbjct: 375 -GRTVILIAHRLSTVVNA-DVIAVVENGQVVETGTHHTLL 488
>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
partial (37%)
Length = 624
Score = 30.4 bits (67), Expect = 0.37
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 101 RAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHILKGTVVISL 160
+++SGG K+RL LV L +DE GLD +V ++ H+ K V+ +
Sbjct: 63 QSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK---HLKKELTVLVV 233
Query: 161 LQPPPETYNLFD 172
E +L D
Sbjct: 234 SHDLREFASLVD 269
>TC17532 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like protein
(At5g02270), partial (48%)
Length = 476
Score = 30.0 bits (66), Expect = 0.49
Identities = 16/54 (29%), Positives = 31/54 (56%)
Frame = +2
Query: 81 VLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLD 134
+++VLG+++ + + +S GQ++R+ L+ P K L +DEI+ LD
Sbjct: 125 LIKVLGIDL-------SWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 265
>TC15966 similar to UP|Q8L5C2 (Q8L5C2) 110 kDa 4SNc-tudor protein, partial
(25%)
Length = 891
Score = 28.1 bits (61), Expect = 1.9
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 209 ADFLQEVTSRKDQEQYWEHKDRPYRFITAEEFSEAFQTFHVGR-RLGDELGTEFDKSNSH 267
A LQE +R ++ W+ K+R + E+F + +T G + GD E D+ +
Sbjct: 547 AAMLQEGLARMEKRNRWDRKERKAGLDSLEKFQDEARTKRRGMWQYGD---VESDEEDGP 717
Query: 268 PAALTTKKYGVGK 280
PA +K G G+
Sbjct: 718 PA----RKAGTGR 744
>CB828601
Length = 333
Score = 25.8 bits (55), Expect = 9.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 84 VLGLEICADTVVGNAMIRAISGG 106
VL + +C D VVG AISGG
Sbjct: 254 VLNVVVCVDGVVGAGCFVAISGG 186
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,953,858
Number of Sequences: 28460
Number of extensions: 62384
Number of successful extensions: 371
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of query: 296
length of database: 4,897,600
effective HSP length: 90
effective length of query: 206
effective length of database: 2,336,200
effective search space: 481257200
effective search space used: 481257200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148607.1