TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148532.15 + phase: 1 /partial
         (178 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP052908                                                               35  0.010
AV774522                                                               30  0.31
CN825379                                                               29  0.41
BI418030                                                               26  3.4
TC10270 homologue to UP|Q8VXT0 (Q8VXT0) Translation initiation f...    25  5.9
TC16958 similar to UP|Q9FNG9 (Q9FNG9) Gb|AAF02137.1, partial (20%)     25  5.9

>BP052908 
          Length = 612

 Score = 34.7 bits (78), Expect = 0.010
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = -3

Query: 18  KWGQKRGKGGKKRDIQ------FYQSFTLRGVDYSLFDNVYVK-NDFAEPRIGKIIKIWE 70
           K G  R   G K + +       Y    + G+ Y L D+ YVK  D     I +I++++E
Sbjct: 448 KKGSARNSNGAKSETENLQVKSHYSQARVDGILYDLNDDAYVKAEDGNADFIARIVEMFE 269

Query: 71  TPTLERKIKVQWFFR 85
           T   ++    QWF+R
Sbjct: 268 TVDDKKYFTAQWFYR 224


>AV774522 
          Length = 541

 Score = 29.6 bits (65), Expect = 0.31
 Identities = 22/82 (26%), Positives = 43/82 (51%), Gaps = 4/82 (4%)
 Frame = +2

Query: 11  ESETLEFKWGQKRGKGGKKRDIQFYQSFTLRGVD--YSLFDNVYVK--NDFAEPRIGKII 66
           ES+ L F +   + + GKK D+    S+T+RG +      D V ++  +    P + ++ 
Sbjct: 179 ESKALVFLFQMAKTRPGKK-DVD---SYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVE 346

Query: 67  KIWETPTLERKIKVQWFFRPIE 88
           KI +      +++V+W++RP E
Sbjct: 347 KIEQDNRSNVRVRVRWYYRPEE 412


>CN825379 
          Length = 646

 Score = 29.3 bits (64), Expect = 0.41
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = +3

Query: 24  GKG-GKKRDIQFYQSFTLRGVDYSLFDNVYV--KNDFAEPRIGKIIKIWETPTLERKIKV 80
           GKG G+KR    +  F   G  Y+L D V +  + +  +P +  I  I ++      +  
Sbjct: 384 GKGRGRKRH---FHCFEFDGNQYALEDPVLLVPEGEDQKPYVAIIKDIAQSVNGSIMVTG 554

Query: 81  QWFFRPIEVSK--CLTWIKIYFNELFFA 106
           QWF+RP E  K    +W      ELF++
Sbjct: 555 QWFYRPEEAEKKGGGSWQSCDARELFYS 638


>BI418030 
          Length = 488

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 60  PRIGKIIKIWETPTLERKIKVQWFFRPIE 88
           P + ++ KI +      K++V+W++RP E
Sbjct: 247 PYVARVEKIEQDTRSNVKVRVRWYYRPEE 333


>TC10270 homologue to UP|Q8VXT0 (Q8VXT0) Translation initiation factor
          (eIF-1A), partial (98%)
          Length = 619

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 1  KSNSPPAPSPESETLEFKWGQKRGKGGKKR 30
          K+ SPP PSP +        + +GKGGK R
Sbjct: 67 KAVSPPPPSPTT------MPKNKGKGGKNR 138


>TC16958 similar to UP|Q9FNG9 (Q9FNG9) Gb|AAF02137.1, partial (20%)
          Length = 644

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 6   PAPSPESETLEFKWGQKRGKGGKKR 30
           P P+PE E    +W + R  GGK R
Sbjct: 263 PDPNPEFEKTVMRWRRLRRGGGKCR 189


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,740,148
Number of Sequences: 28460
Number of extensions: 56195
Number of successful extensions: 271
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of query: 178
length of database: 4,897,600
effective HSP length: 84
effective length of query: 94
effective length of database: 2,506,960
effective search space: 235654240
effective search space used: 235654240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)