BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.11 - phase: 0
(143 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8498 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16... 272 1e-74
TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S1... 269 1e-73
AV427141 81 8e-17
TC17456 29 0.35
TC10687 similar to GB|BAC16141.1|22831286|AP005184 30S ribosomal... 27 1.3
TC13374 similar to UP|Q9FJK7 (Q9FJK7) Cyclin C-like protein, par... 25 5.1
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1... 25 6.7
AV770513 25 6.7
>TC8498 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 693
Score = 272 bits (696), Expect = 1e-74
Identities = 132/140 (94%), Positives = 138/140 (98%)
Frame = +1
Query: 4 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
LEQVQCFGRKKNAVAVTYCKRGRGLIKING PIEL++PEILRFKAFEPILLLG+HRFAGV
Sbjct: 34 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGV 213
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 123
DMRIRV GGGHT+QIYAIRQSIAKALVAYYQKYVDEQSKKEIKDIL+RYDRTLLVADPRR
Sbjct: 214 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRR 393
Query: 124 CEPKKFGGRGARARFQKSYR 143
CEPKKFGGRGAR+RFQKSYR
Sbjct: 394 CEPKKFGGRGARSRFQKSYR 453
>TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 808
Score = 269 bits (688), Expect = 1e-73
Identities = 131/140 (93%), Positives = 138/140 (98%)
Frame = +1
Query: 4 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
+EQVQCFGRKKNAVAVTYCKRGRGLIKING+PIEL+EPEILRFKAFEPILLLGK RFAGV
Sbjct: 64 MEQVQCFGRKKNAVAVTYCKRGRGLIKINGSPIELIEPEILRFKAFEPILLLGKSRFAGV 243
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 123
DMRIRV GGGHT+QIYAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRR
Sbjct: 244 DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILIRYDRTLLVADPRR 423
Query: 124 CEPKKFGGRGARARFQKSYR 143
CEPKKFGGRGAR+RFQKSYR
Sbjct: 424 CEPKKFGGRGARSRFQKSYR 483
>AV427141
Length = 286
Score = 80.9 bits (198), Expect = 8e-17
Identities = 41/58 (70%), Positives = 47/58 (80%), Gaps = 1/58 (1%)
Frame = +1
Query: 7 VQCFGRKKNAVAVTYCKR-GRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
VQ FGRKK AVAV K G+GL+K+NG PIEL+EPEILR K FEP+LLLG+ RFAGV
Sbjct: 112 VQVFGRKKTAVAVALIKGDGKGLMKVNGCPIELLEPEILRVKVFEPLLLLGQERFAGV 285
>TC17456
Length = 825
Score = 28.9 bits (63), Expect = 0.35
Identities = 18/59 (30%), Positives = 29/59 (48%)
Frame = +2
Query: 82 RQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQK 140
R K L A+ Y+D++ K++ KDI DR++ R+C + G A F+K
Sbjct: 8 RPPTTKVLEAFAFGYLDQKEKRKRKDI---QDRSVSRPSRRQCRKEVVGSSSDCAGFEK 175
>TC10687 similar to GB|BAC16141.1|22831286|AP005184 30S ribosomal protein
S9-like protein contains ESTs
C96952(C50186),AU108714(C50186) {Oryza sativa (japonica
cultivar-group);}, partial (18%)
Length = 664
Score = 26.9 bits (58), Expect = 1.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKAL 89
D+ V GGG + Q+ AIR I+KAL
Sbjct: 57 DVTCTVKGGGVSGQVGAIRLGISKAL 134
>TC13374 similar to UP|Q9FJK7 (Q9FJK7) Cyclin C-like protein, partial (64%)
Length = 569
Score = 25.0 bits (53), Expect = 5.1
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 86 AKALVAYYQK-YVDEQSKKEIKDIL 109
A+ LV Y +K Y D++ + EIKDIL
Sbjct: 386 ARLLVFYIKKLYADDKYRYEIKDIL 460
>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (43%)
Length = 1108
Score = 24.6 bits (52), Expect = 6.7
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 67 IRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEP 126
+RVNGGG + + A+R + +AL + I +++ + R +
Sbjct: 504 VRVNGGGGSGKGKAVRDAADRALAVAARGRTRWSMAILTNRIKIKFRKQQQQQRKRLLQQ 683
Query: 127 KKFG-GRGARARF 138
K G GR +ARF
Sbjct: 684 KPAGPGRSKKARF 722
>AV770513
Length = 491
Score = 24.6 bits (52), Expect = 6.7
Identities = 16/35 (45%), Positives = 19/35 (53%)
Frame = -1
Query: 39 VEPEILRFKAFEPILLLGKHRFAGVDMRIRVNGGG 73
VEPE+LRFK+ L KH F + V GGG
Sbjct: 332 VEPEVLRFKS-----LHEKHSFV-----VTVAGGG 258
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.142 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,967,971
Number of Sequences: 28460
Number of extensions: 20023
Number of successful extensions: 105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of query: 143
length of database: 4,897,600
effective HSP length: 82
effective length of query: 61
effective length of database: 2,563,880
effective search space: 156396680
effective search space used: 156396680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC148528.11