BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148486.12 + phase: 0 /partial
(391 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19254 weakly similar to UP|Q94C33 (Q94C33) AT3g51180/F24M12_22... 170 4e-43
AW428762 133 6e-32
AV425149 102 1e-22
CB829142 31 0.31
BP045541 31 0.31
TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, ... 31 0.40
TC17917 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Ar... 30 0.69
TC8117 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partia... 29 1.2
TC12487 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein (At1g7938... 28 2.0
BP072692 28 2.0
BI418736 28 2.6
AV772796 28 2.6
TC19465 similar to AAR92318 (AAR92318) At5g10310, partial (16%) 28 2.6
TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabid... 28 2.6
TC17733 similar to UP|Q7XA63 (Q7XA63) At5g19860, partial (63%) 28 3.4
TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation prot... 28 3.4
TC12241 weakly similar to AAR05798 (AAR05798) LLS1-like protein,... 28 3.4
TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%) 28 3.4
BP046856 28 3.4
AV409227 27 4.5
>TC19254 weakly similar to UP|Q94C33 (Q94C33) AT3g51180/F24M12_220, partial
(4%)
Length = 502
Score = 170 bits (430), Expect = 4e-43
Identities = 97/163 (59%), Positives = 117/163 (71%), Gaps = 15/163 (9%)
Frame = +1
Query: 90 DQHQREMRVLEAIYPRISSIPPNP-ISVDVDDSHYIDGHIVVIPITPVEDGDVGADTLS- 147
DQH+RE+RVLEAIYPRISSIP NP +SVDV++SH+IDG I +IPITP+ED D ADT+S
Sbjct: 7 DQHKRELRVLEAIYPRISSIPSNPAVSVDVENSHHIDGQIPLIPITPIEDDDAVADTVSN 186
Query: 148 --------PGILDGSNTVTTMSMV----SDVAAASVALTSLVKSSEHGNLIDPELLNDIL 195
GIL S++ T M + SDVAAA+ ALT++VKS+E GNLID ELL +IL
Sbjct: 187 VSQSLEQPTGILKVSSSATNMHLAGGLGSDVAAAAAALTNIVKSNERGNLIDHELLKNIL 366
Query: 196 NNPEVIEKLVRNYNV-QNAQYAQNTGSSSNVFSHPPNPFNQVE 237
+PEVIEKLVR+Y V N+QY N G SS FS PP NQ E
Sbjct: 367 RSPEVIEKLVRDYGVTNNSQYVHNVGPSSAAFSRPPIATNQGE 495
>AW428762
Length = 332
Score = 133 bits (334), Expect = 6e-32
Identities = 70/110 (63%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = +2
Query: 239 TTSSSNAFSS--TSSYTHTTGGQMAPTMSTQWHRRPEISSAIAATPVEVPSTKDVNYYKS 296
T NA S TSSY H TGGQ A ++STQW RP ++S A+PVEVPS KD NYYKS
Sbjct: 8 TNQGENALLSSVTSSYIHPTGGQAA-SVSTQWVPRPVVNSVSVASPVEVPSKKDANYYKS 184
Query: 297 LIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPKISKPCIF 346
LIQQHGGDKQE PYSSSN Q QQP++ Y+T +N RAK +PKI KPCIF
Sbjct: 185 LIQQHGGDKQETFPYSSSN-QIQQPVNQYETAYNPRAKALRPKIMKPCIF 331
>AV425149
Length = 362
Score = 102 bits (254), Expect = 1e-22
Identities = 52/64 (81%), Positives = 54/64 (84%)
Frame = +2
Query: 1 VRLFLSEESPSQVGLNSQDHLQEKISSLLPQGEAGSDDILPPGFEGTHTSSQFDIKLSDI 60
VRLFLS+ESPSQVGLNSQDHLQ K S LL G AGSDD LPPGFEGTH SSQF+I LS I
Sbjct: 170 VRLFLSDESPSQVGLNSQDHLQAKTSLLLHPGGAGSDDSLPPGFEGTHASSQFEINLSQI 349
Query: 61 PVIS 64
PVIS
Sbjct: 350 PVIS 361
>CB829142
Length = 534
Score = 31.2 bits (69), Expect = 0.31
Identities = 16/44 (36%), Positives = 23/44 (51%)
Frame = +2
Query: 227 SHPPNPFNQVETTTSSSNAFSSTSSYTHTTGGQMAPTMSTQWHR 270
S PP P TTT + +S +S + T+ APT ++QW R
Sbjct: 47 SKPPAPTTTTWTTTR*RRSTTSATSTSSTSPPAPAPTSTSQWRR 178
>BP045541
Length = 572
Score = 31.2 bits (69), Expect = 0.31
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
Frame = +1
Query: 232 PFNQVETTTSSSNAFSSTSSYTHT---TGGQMAPTMSTQWHR 270
P+ T S +N + STS+ T T +GG+ A T+ST W R
Sbjct: 211 PYPLTSTKQSFTNEWQSTSTCTATINSSGGKQASTLSTIWFR 336
>TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, P1 clone:
MZE19, partial (30%)
Length = 805
Score = 30.8 bits (68), Expect = 0.40
Identities = 20/63 (31%), Positives = 37/63 (57%), Gaps = 2/63 (3%)
Frame = +3
Query: 228 HPPNPFNQVETTTSSSNAFSSTSSYTHTTGGQMAPTMS--TQWHRRPEISSAIAATPVEV 285
+PP P + +T +SSN SSTS+ + T+G +AP+ S + P +S ++ +++
Sbjct: 288 NPPAPASAGTSTAASSNT-SSTSTASSTSGKPLAPSPSAASSTPLTPTPTSTSPSSTLQL 464
Query: 286 PST 288
P+T
Sbjct: 465 PAT 473
>TC17917 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Arabidopsis
thaliana;}, partial (35%)
Length = 587
Score = 30.0 bits (66), Expect = 0.69
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 335 GSKPKISKP--CIFFNSSRGCRNGANCTFQH 363
GS P + K C +NSS GC+ G C F H
Sbjct: 376 GSSPPVVKTRMCNKYNSSEGCKFGDRCHFAH 468
Score = 30.0 bits (66), Expect = 0.69
Identities = 18/44 (40%), Positives = 21/44 (46%), Gaps = 10/44 (22%)
Frame = +1
Query: 330 NFRAKGSKPKI----------SKPCIFFNSSRGCRNGANCTFQH 363
N AK SKP++ SKPC F S+ GC G C F H
Sbjct: 136 NGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLH 267
>TC8117 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partial (41%)
Length = 766
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/29 (51%), Positives = 17/29 (57%)
Frame = +3
Query: 335 GSKPKISKPCIFFNSSRGCRNGANCTFQH 363
GSK SKPC F S+ GC G +C F H
Sbjct: 285 GSK---SKPCTKFFSTAGCPFGESCHFLH 362
Score = 28.1 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 335 GSKPKI-SKPCIFFNSSRGCRNGANCTFQH 363
GS P + ++ C FN++ GC+ G C F H
Sbjct: 468 GSTPAVKTRICNKFNTAEGCKFGDKCHFAH 557
>TC12487 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein
(At1g79380/T8K14_20), partial (57%)
Length = 1091
Score = 28.5 bits (62), Expect = 2.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 238 TTTSSSNAFSSTSSYTHTTGGQMAPTMSTQWHR 270
TTT++S TS YT T P +S QW R
Sbjct: 580 TTTTTSCTKQHTSIYTRRTKPSCLPCLSDQWKR 678
>BP072692
Length = 422
Score = 28.5 bits (62), Expect = 2.0
Identities = 22/63 (34%), Positives = 29/63 (45%)
Frame = +2
Query: 226 FSHPPNPFNQVETTTSSSNAFSSTSSYTHTTGGQMAPTMSTQWHRRPEISSAIAATPVEV 285
F PP P + T T+SS+A S+S PT S P +SS ++TP
Sbjct: 161 FHPPPRPHRRQLTATTSSSATPSSS-----------PTPSAA----PPLSSPPSSTPSPS 295
Query: 286 PST 288
PST
Sbjct: 296 PST 304
>BI418736
Length = 544
Score = 28.1 bits (61), Expect = 2.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 218 NTGSSSNVFS--HPPNPFNQVETTTSSSNAFSSTSSYTHTTGGQMAPTMSTQWHRRPEIS 275
++ SSSN+ H P P + + S+ +S S T T ++PT+S P S
Sbjct: 50 SSSSSSNLLLLLHLPIPTPSLSPKHTHSSVPTSPSKPTPTAAYSISPTLSKSPPPPPSPS 229
Query: 276 SAIAATPVEVPST 288
+A A P P+T
Sbjct: 230 TAH*AAPQSSPAT 268
>AV772796
Length = 418
Score = 28.1 bits (61), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +3
Query: 345 IFFNSSRGCRNGANCTFQHDASFQPQQGNPSSGMHSSKRMKMDNE 389
+F +S + RNG++ F H A F ++G S + MDNE
Sbjct: 204 VFLDSKKRKRNGSSLGFMHQAIF-------NTGASVSDSLNMDNE 317
>TC19465 similar to AAR92318 (AAR92318) At5g10310, partial (16%)
Length = 547
Score = 28.1 bits (61), Expect = 2.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 348 NSSRGCRNGANCTFQHDASFQPQQGNPSSGMHSS 381
NSS+G G + +AS+ PQQ P S MH S
Sbjct: 50 NSSKGPIFG*EKQARFNASYMPQQMQPVSSMHGS 151
>TC16575 homologue to GB|AAB61094.1|2194119|F20P5 F20P5.5 {Arabidopsis
thaliana;}, partial (8%)
Length = 868
Score = 28.1 bits (61), Expect = 2.6
Identities = 16/56 (28%), Positives = 28/56 (49%)
Frame = -3
Query: 201 IEKLVRNYNVQNAQYAQNTGSSSNVFSHPPNPFNQVETTTSSSNAFSSTSSYTHTT 256
I++ + N N+ + T +S + SHPP+ N ++ A +STS + H T
Sbjct: 734 IDRSIYNKNLFHLFNLCPTEASLQLISHPPSSTNLAGNRSTCR*ARASTSEHNHCT 567
>TC17733 similar to UP|Q7XA63 (Q7XA63) At5g19860, partial (63%)
Length = 711
Score = 27.7 bits (60), Expect = 3.4
Identities = 20/59 (33%), Positives = 28/59 (46%), Gaps = 3/59 (5%)
Frame = +2
Query: 221 SSSNVFSHPPNPFNQVETTTSSSNAFSSTSSYTHTTGGQMAPT---MSTQWHRRPEISS 276
SS + P+P + TTSS + S +SY + G +PT S+ W RR SS
Sbjct: 119 SSPSSLHLSPSPPPKKRPTTSSPSTASPAASYRTPSPGTPSPTTADSSSIWPRRATSSS 295
>TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation protein ATAN11,
partial (79%)
Length = 919
Score = 27.7 bits (60), Expect = 3.4
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Frame = +1
Query: 221 SSSNVFSHPPNPFNQVETTTSSSNAFSST--SSYTHTTGGQMAP 262
S SN +HPP PF+ + T S NA +S+ + + GG P
Sbjct: 286 SPSNTHTHPPRPFSSL---TKSVNALTSSPPPATSSACGGSPTP 408
>TC12241 weakly similar to AAR05798 (AAR05798) LLS1-like protein, partial
(7%)
Length = 398
Score = 27.7 bits (60), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 360 TFQHDASFQPQQGNPSSGMHS 380
TFQH ++ QP GNP S H+
Sbjct: 124 TFQHHSNHQPHLGNPCS*AHN 186
>TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%)
Length = 722
Score = 27.7 bits (60), Expect = 3.4
Identities = 15/31 (48%), Positives = 18/31 (57%), Gaps = 5/31 (16%)
Frame = +2
Query: 228 HPPNP-----FNQVETTTSSSNAFSSTSSYT 253
HP +P FN+V T S+ F STSSYT
Sbjct: 389 HPLDPLTIQEFNKVRTILSTHPLFKSTSSYT 481
>BP046856
Length = 486
Score = 27.7 bits (60), Expect = 3.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 236 VETTTSSSNAFSSTSSYTHTTGGQMAPTMSTQWHRRPEISSA 277
+ET S+S AFS + H G + T WH+RP SS+
Sbjct: 255 LETGQSASPAFSFGDCHFHYGGKE------TNWHQRPRKSSS 362
>AV409227
Length = 427
Score = 27.3 bits (59), Expect = 4.5
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = +1
Query: 342 KPCIFFNSSRGCRNGANCTFQH 363
+ C F+ + C+ GANC F H
Sbjct: 100 RECPFYMRTGSCKYGANCRFNH 165
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,800,307
Number of Sequences: 28460
Number of extensions: 99541
Number of successful extensions: 599
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of query: 391
length of database: 4,897,600
effective HSP length: 92
effective length of query: 299
effective length of database: 2,279,280
effective search space: 681504720
effective search space used: 681504720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC148486.12