TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148485.3 - phase: 0 /pseudo
         (138 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP057421                                                               46  2e-06
BP055095                                                               46  3e-06
BP075566                                                               42  3e-05
AV771159                                                               30  0.15
TC15657 similar to UP|Q40977 (Q40977) Monodehydroascorbate reduc...    27  1.7
TC15989                                                                25  4.8

>BP057421 
          Length = 547

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 19/42 (45%), Positives = 29/42 (68%)
 Frame = +3

Query: 93  KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
           K  +++++T Y +KILGLD C DT+VG +M RG   G K+ +
Sbjct: 294 KGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRV 419


>BP055095 
          Length = 538

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +3

Query: 95  KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
           +++ +VT Y +K+LGLD CAD M+G +M RG   G K+ +
Sbjct: 9   QRSQLVTDYALKVLGLDICADVMIGDEMRRGISGGQKKRV 128


>BP075566 
          Length = 253

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -1

Query: 93  KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPK 131
           K  +T+++T Y + +LGLD C DT++G DM RG    P+
Sbjct: 181 KGTETSLITDYTLTLLGLDICKDTLLGDDMHRGAFWWPE 65


>AV771159 
          Length = 486

 Score = 30.0 bits (66), Expect = 0.15
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 104 IIKILGLDFCADTMVGGDMIRGTLSGPKRELEL 136
           +I  LGL  C  +M+GG ++RG     KR + +
Sbjct: 449 VITELGLSGCRSSMIGGPLLRGISGAEKRRVSI 351


>TC15657 similar to UP|Q40977 (Q40977) Monodehydroascorbate reductase ,
          partial (48%)
          Length = 915

 Score = 26.6 bits (57), Expect = 1.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 24 IKPKRSSEFWKDYIVVGIGGKTRTSAYK 51
          +K K   +   D +VVG+GG+  TS +K
Sbjct: 68 VKLKDGRDLEADLVVVGVGGRPLTSLFK 151


>TC15989 
          Length = 526

 Score = 25.0 bits (53), Expect = 4.8
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 51 KSN*YRTVFQLCGIRRYA-GRII 72
          +SN YRTV + CG + YA GRI+
Sbjct: 67 QSNIYRTVSKFCG*KIYANGRIL 135


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.351    0.160    0.530 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,904,107
Number of Sequences: 28460
Number of extensions: 18615
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of query: 138
length of database: 4,897,600
effective HSP length: 81
effective length of query: 57
effective length of database: 2,592,340
effective search space: 147763380
effective search space used: 147763380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 50 (23.9 bits)