BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148485.1 - phase: 0
(55 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%) 88 4e-19
TC17703 homologue to UP|CAC19183 (CAC19183) Expansin, partial (82%) 83 1e-17
TC12913 homologue to UP|Q84L76 (Q84L76) Expansin precursor, part... 77 9e-16
TC15478 homologue to UP|AAQ08016 (AAQ08016) Expansin, partial (33%) 75 2e-15
TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial... 75 3e-15
TC12840 similar to PIR|T02010|T02010 expansin homolog T15B16.16 ... 74 6e-15
TC15173 similar to UP|AAR09168 (AAR09168) Alpha-expansin 1, part... 74 8e-15
BP041103 73 1e-14
TC9933 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precu... 73 1e-14
AV417335 65 3e-12
AU251791 55 2e-09
TC8872 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, partial... 50 9e-08
TC8100 similar to PIR|T50657|T50657 beta-expansin [imported] - A... 35 0.003
TC14387 UP|Q8L5G4 (Q8L5G4) Alpha-expansin 4, partial (7%) 35 0.003
TC10207 homologue to UP|Q8LG48 (Q8LG48) Contains similarity to p... 24 5.4
TC16417 homologue to UP|AAR83884 (AAR83884) Ly200 protein, complete 24 7.0
AU088926 23 9.1
TC17102 UP|CAE45588 (CAE45588) Papain-like cysteine proteinase-l... 23 9.1
>TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%)
Length = 1313
Score = 87.8 bits (216), Expect = 4e-19
Identities = 38/53 (71%), Positives = 43/53 (80%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSYLNGQSLSF VTT +G +I+S N P W FGQT++G QF
Sbjct: 680 MSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTIISNNAVPAGWQFGQTFSGGQF 838
>TC17703 homologue to UP|CAC19183 (CAC19183) Expansin, partial (82%)
Length = 687
Score = 83.2 bits (204), Expect = 1e-17
Identities = 37/39 (94%), Positives = 38/39 (96%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAP 39
MSRNWGQNWQSNSYLNGQSLSFVVTT NGHS+VSFNVAP
Sbjct: 569 MSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNVAP 685
>TC12913 homologue to UP|Q84L76 (Q84L76) Expansin precursor, partial (78%)
Length = 606
Score = 76.6 bits (187), Expect = 9e-16
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNS L GQ+LSF VT + + S+NVAP +W FGQT+TG+ F
Sbjct: 446 MSRNWGQNWQSNSVLVGQTLSFRVTGSDRRTSTSWNVAPANWQFGQTFTGKNF 604
>TC15478 homologue to UP|AAQ08016 (AAQ08016) Expansin, partial (33%)
Length = 629
Score = 75.5 bits (184), Expect = 2e-15
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNS L GQSLSF VT + + S N+ P W FGQT+TG+ F
Sbjct: 91 MSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSLNIVPSHWQFGQTFTGKNF 249
>TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial (92%)
Length = 1277
Score = 75.1 bits (183), Expect = 3e-15
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNS L GQ+LSF VT + + S+NVAP W FGQT+TG+ F
Sbjct: 655 MSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGKNF 813
>TC12840 similar to PIR|T02010|T02010 expansin homolog T15B16.16 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(60%)
Length = 648
Score = 73.9 bits (180), Expect = 6e-15
Identities = 32/51 (62%), Positives = 39/51 (75%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGR 51
MSRNWG NWQS SYLNGQSLSF + NG + ++NVAP SW FGQ++T +
Sbjct: 309 MSRNWGVNWQSLSYLNGQSLSFRIQLRNGKTRTAYNVAPSSWKFGQSFTSK 461
>TC15173 similar to UP|AAR09168 (AAR09168) Alpha-expansin 1, partial (50%)
Length = 898
Score = 73.6 bits (179), Expect = 8e-15
Identities = 31/53 (58%), Positives = 40/53 (74%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWG+NWQSN+ L GQ+LSF VT + + S+N+AP W FGQT+TG+ F
Sbjct: 233 MSRNWGRNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPAHWQFGQTFTGKNF 391
>BP041103
Length = 531
Score = 72.8 bits (177), Expect = 1e-14
Identities = 30/53 (56%), Positives = 39/53 (72%)
Frame = -1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
M RNWGQNW N+ L Q LSF VT+ +G ++ +NVAP +WSFGQT+ G+QF
Sbjct: 387 MGRNWGQNWHLNALLQNQPLSFEVTSSDGITLTCYNVAPKNWSFGQTFEGKQF 229
>TC9933 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (24%)
Length = 552
Score = 72.8 bits (177), Expect = 1e-14
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
M RNWGQNW N+ L Q LSF VT +G ++ S+N AP WSFGQT+ G+QF
Sbjct: 31 MGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEGKQF 189
>AV417335
Length = 428
Score = 65.1 bits (157), Expect = 3e-12
Identities = 28/45 (62%), Positives = 36/45 (79%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFG 45
MSRNWG NWQSN++LNGQSLSF +TT +G + V +V P +W+FG
Sbjct: 294 MSRNWGANWQSNAFLNGQSLSFRITTTDGETRVFPDVVPGNWAFG 428
>AU251791
Length = 343
Score = 55.5 bits (132), Expect = 2e-09
Identities = 24/31 (77%), Positives = 27/31 (86%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHS 31
MSRNWGQNWQSN+ LNGQSLSF VTT +G +
Sbjct: 250 MSRNWGQNWQSNANLNGQSLSFKVTTSDGRT 342
>TC8872 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, partial (82%)
Length = 729
Score = 50.1 bits (118), Expect = 9e-08
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSF 22
MS NWGQNWQSNSYLNGQSLSF
Sbjct: 663 MSTNWGQNWQSNSYLNGQSLSF 728
>TC8100 similar to PIR|T50657|T50657 beta-expansin [imported] - Arabidopsis
thaliana (fragment) {Arabidopsis thaliana;}, partial
(36%)
Length = 809
Score = 35.0 bits (79), Expect = 0.003
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 55
MS WG NW N S ++T G S+ + +V P +W TYT R Y
Sbjct: 138 MSHLWGANWCLNGGPIKGPFSVKLSTSTGRSLSARDVIPSNWVPKATYTSRLNFY 302
>TC14387 UP|Q8L5G4 (Q8L5G4) Alpha-expansin 4, partial (7%)
Length = 600
Score = 35.0 bits (79), Expect = 0.003
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 37 VAPPSWSFGQTYTGRQF 53
VAP WSFGQTYTG QF
Sbjct: 3 VAPAGWSFGQTYTGAQF 53
>TC10207 homologue to UP|Q8LG48 (Q8LG48) Contains similarity to
poly(A)-binding protein II, partial (8%)
Length = 521
Score = 24.3 bits (51), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 9 WQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSF 44
WQ N+ L+ V+T G G+ S ++A +W F
Sbjct: 235 WQINNALSSSYRKHVITYGIGNDRRSTSMACIAWVF 128
>TC16417 homologue to UP|AAR83884 (AAR83884) Ly200 protein, complete
Length = 719
Score = 23.9 bits (50), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 21 SFVVTTGNGHSIVSFNVAPP 40
+F+ GNGH + S N APP
Sbjct: 87 NFLGQQGNGHLVSSGNGAPP 28
>AU088926
Length = 487
Score = 23.5 bits (49), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (57%)
Frame = +1
Query: 3 RNWGQNWQSNSYLNGQSLSFVVTT 26
RNW Q W N Q +SF++++
Sbjct: 139 RNWSQTWNGN-----QHVSFILSS 195
>TC17102 UP|CAE45588 (CAE45588) Papain-like cysteine proteinase-like protein
1, complete
Length = 1086
Score = 23.5 bits (49), Expect = 9.1
Identities = 6/14 (42%), Positives = 9/14 (63%)
Frame = +1
Query: 1 MSRNWGQNWQSNSY 14
+ +WG+NW N Y
Sbjct: 961 IKNSWGENWGENGY 1002
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.130 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,284,220
Number of Sequences: 28460
Number of extensions: 12799
Number of successful extensions: 84
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of query: 55
length of database: 4,897,600
effective HSP length: 31
effective length of query: 24
effective length of database: 4,015,340
effective search space: 96368160
effective search space used: 96368160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)
Medicago: description of AC148485.1