BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148484.4 - phase: 0
(542 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, pa... 233 6e-62
AV774473 178 2e-45
AV766135 134 4e-32
AV409813 124 5e-29
AV419737 93 1e-19
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 91 4e-19
TC12968 weakly similar to UP|AAS45959 (AAS45959) Envelope glycop... 83 1e-16
TC12047 similar to UP|O81316 (O81316) F6N15.20 protein (SCARECRO... 80 1e-15
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 72 2e-13
TC19345 similar to UP|O81316 (O81316) F6N15.20 protein (SCARECRO... 63 1e-10
TC11652 similar to UP|O81316 (O81316) F6N15.20 protein (SCARECRO... 63 1e-10
TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r... 50 9e-07
AV770800 48 5e-06
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 44 9e-05
AV414168 41 4e-04
CN825078 41 6e-04
AV416351 40 7e-04
AU251563 37 0.008
TC12471 similar to GB|AAA59875.1|188864|HUMMUC2A mucin {Homo sap... 36 0.014
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ... 36 0.018
>TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, partial (23%)
Length = 414
Score = 233 bits (594), Expect = 6e-62
Identities = 121/141 (85%), Positives = 127/141 (89%), Gaps = 1/141 (0%)
Frame = +2
Query: 157 LDHLVNDFNNNQPNNNTNSNWDFIEELIRAADCFDNNHLQLAQAILERLNQRLRSPTGKP 216
LD ++DFN NNN WDFIEELIRAADCFD+N LQLAQAILERLNQRLRSP+GKP
Sbjct: 2 LDPSIHDFNPQTHNNN----WDFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKP 169
Query: 217 LHRAAFHFKDALQSLLSGSNRTN-PPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQ 275
LHRAAFHFKDALQSLLSGSNRTN PPRLSSM EIVQ+IR FKAFSGISPIPMFSIFTTNQ
Sbjct: 170 LHRAAFHFKDALQSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQ 349
Query: 276 ALLEALHGSLYMHVVDFEIGL 296
ALLEALHGSL+MHVVDFEIGL
Sbjct: 350 ALLEALHGSLFMHVVDFEIGL 412
>AV774473
Length = 449
Score = 178 bits (452), Expect = 2e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = -3
Query: 453 GEWARRIEMLLLRPKIIAAVEAAGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQ 512
G+WARRIEMLLLRPKI AAVEAAGRR+ PWREAFYGAGMRPVQLSQFADFQAECLLAKVQ
Sbjct: 447 GDWARRIEMLLLRPKIFAAVEAAGRRSPPWREAFYGAGMRPVQLSQFADFQAECLLAKVQ 268
Query: 513 IRGFHVAKRQAELVLFWHERAMVATSAWRC 542
IRGFHVAKRQAELVLFWHERAM+ATSAWRC
Sbjct: 267 IRGFHVAKRQAELVLFWHERAMLATSAWRC 178
>AV766135
Length = 300
Score = 134 bits (337), Expect = 4e-32
Identities = 64/68 (94%), Positives = 64/68 (94%)
Frame = -1
Query: 475 AGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAM 534
AGRR PWREAFY AGMRPVQLSQFADFQAECLLAK QIRGFHVAKRQAELVLFWHERAM
Sbjct: 300 AGRRMPPWREAFYCAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQAELVLFWHERAM 121
Query: 535 VATSAWRC 542
VATSAWRC
Sbjct: 120 VATSAWRC 97
>AV409813
Length = 424
Score = 124 bits (310), Expect = 5e-29
Identities = 71/129 (55%), Positives = 86/129 (66%), Gaps = 7/129 (5%)
Frame = +3
Query: 1 MRVPPPAVSSSSSSPQPKLTT-TQNIVVNVPTPNP-TPTPTTTTLCYEPRSVLELCRSPS 58
MRVP VSSSSSS Q + QN++++ PNP T LCYEP+SVL+LCRSPS
Sbjct: 39 MRVP---VSSSSSSTQANTSKLAQNVILHTTPPNPNTINNNNQNLCYEPKSVLDLCRSPS 209
Query: 59 PEKK-----PSQQEQEHNPEVEQEDHASLPNLDWWDSIMKDLGLQDDSSTPIIPLLKNTN 113
PEKK P EQ+H+ E + EDH LPNLDWWDSIMKDLGL DDS+T PLLK +
Sbjct: 210 PEKKTTAPKPEPDEQQHSIEEQLEDHV-LPNLDWWDSIMKDLGLHDDSTT---PLLKTNS 377
Query: 114 NTSEIYPNP 122
++S + NP
Sbjct: 378 DSSSLNSNP 404
>AV419737
Length = 410
Score = 92.8 bits (229), Expect = 1e-19
Identities = 54/129 (41%), Positives = 78/129 (59%)
Frame = +3
Query: 172 NTNSNWDFIEELIRAADCFDNNHLQLAQAILERLNQRLRSPTGKPLHRAAFHFKDALQSL 231
N ++L + A+ + + AQ IL RLN +L SP GKP HRAAF+ K+ALQS+
Sbjct: 33 NNQLQQSIFDQLYKTAELIEAGNPVHAQGILARLNHQL-SPNGKPFHRAAFYMKEALQSM 209
Query: 232 LSGSNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSLYMHVVD 291
L SN N S + + I +K+FS ISP+ F+ FT NQAL+EA+ +H++D
Sbjct: 210 LH-SNGHNFLTFSP-ISFIFKIGAYKSFSEISPVLQFANFTCNQALIEAVERFDRIHIID 383
Query: 292 FEIGLGIQY 300
F+IG G+Q+
Sbjct: 384 FDIGFGVQW 410
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 91.3 bits (225), Expect = 4e-19
Identities = 84/291 (28%), Positives = 129/291 (43%), Gaps = 13/291 (4%)
Frame = +2
Query: 264 PIPMFSIFTTNQALLEALHGSLYMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRITAV 323
P F+ FT NQA+LEA G +HV+DF I G+Q+ +LM+ +A + G P R+T +
Sbjct: 11 PYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRP-GGPPAFRLTGI 187
Query: 324 VP--EEYAVESRLIRENLNQFAHDLGIRVQV-DFVPLRTFE-TVSFKAVRFVDGEKTAIL 379
P + + + + L Q A + ++ + FV + S +R + E A+
Sbjct: 188 GPPAPDNSDHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEESVAVN 367
Query: 380 LTPAIFCRLGSEGT-AAFLSDVRRITPGVVVFVDGEGWTEAAAAASFRRGVVNSLEFYSM 438
+ L G S +R++ P ++ V+ E ASF SL +YS
Sbjct: 368 SVFELHKLLARPGALEKVFSVIRQVQPEILTVVEQEA---GHNGASFLDRFTESLHYYSA 538
Query: 439 MLESLDASVAAGGGGEWARRIEMLLLRPKIIAAVEAAG-------RRTTPWREAFYGAGM 491
+ +SL+ S A + + + L +I V G T WR F AG+
Sbjct: 539 LFDSLEGSSAVESQD---KAMTEIYLGKQICNVVACEGSDRIERHETLTQWRTRFNSAGL 709
Query: 492 RPVQLSQFADFQAECLLAK-VQIRGFHVAKRQAELVLFWHERAMVATSAWR 541
PV L A QA LLA G+ V + L L WH R ++ATSAW+
Sbjct: 710 SPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQ 862
>TC12968 weakly similar to UP|AAS45959 (AAS45959) Envelope glycoprotein,
partial (4%)
Length = 400
Score = 82.8 bits (203), Expect = 1e-16
Identities = 63/158 (39%), Positives = 82/158 (51%), Gaps = 9/158 (5%)
Frame = +2
Query: 24 NIVVNVPTPNPT---PTPTTTTLC----YEPRSVLELCRSPSPEKKPSQQEQEHNPEVEQ 76
++ + VP +P P PTTTT+ YEP SVL+LCRSPSP P + Q+ PE+
Sbjct: 17 HLAMRVPVSSPPHAIPKPTTTTITGPYNYEPTSVLDLCRSPSPGSVPQKPTQD-CPEL-- 187
Query: 77 EDHASLPNLDWWDSIMKDLGLQDDSSTPIIPLLKNTNNTSEIYPNPSQD--QFDQTQDFT 134
+DHA L NLD WDSIM DLG DD++T T+ I+P P D FDQ + T
Sbjct: 188 DDHA-LHNLD-WDSIMNDLGFHDDTTTA---------TTAHIFP-PVTDFTPFDQAAELT 331
Query: 135 SLSDIYSNNQNLAYNYPNTNTNLDHLVNDFNNNQPNNN 172
D+Y N +NYP +N+ NNN
Sbjct: 332 VTGDMYGYN----FNYPT-----------LDNHHSNNN 400
>TC12047 similar to UP|O81316 (O81316) F6N15.20 protein (SCARECROW-like 6)
(SCL6) (AT4g00150/F6N15_20), partial (16%)
Length = 617
Score = 79.7 bits (195), Expect = 1e-15
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Frame = +3
Query: 433 LEFYSMMLESLDASVAAGGGGEWARRIEMLLLRP---KIIAAVEAAGRRTTPWREAFYGA 489
L+ YS +LESLDA + ++IE ++P KI+ + + TPWR F +
Sbjct: 6 LQCYSALLESLDA---VNVNXDVLQKIERHFVQPAIKKIVLGHHHSQEKLTPWRNLFLQS 176
Query: 490 GMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC 542
G P S F + QAECL+ + +RGF V ++ + LVL W + +++ S WRC
Sbjct: 177 GFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC 335
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 72.4 bits (176), Expect = 2e-13
Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 19/354 (5%)
Frame = +1
Query: 207 QRLRSPTGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSSMVEIVQTIRTFK-AFSGISPI 265
Q++ S G P R + + L++ L S L + + ++ I P
Sbjct: 1 QKMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQPTGKELMSYMHILYQICPY 180
Query: 266 PMFSIFTTNQALLEALHGSLYMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRITAVVP 325
F+ + N A+ EA+ +H++DF+I G Q+ L++ +A + G P +RIT V
Sbjct: 181 WKFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRP-GGPPFIRITG-VD 354
Query: 326 EEYAVESR-----LIRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFVDGEKTAILL 380
+ + +R ++ E L+ FA G+ + + E V + + GE A+
Sbjct: 355 DSQSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGCE-VERENLGVRPGEALAVNF 531
Query: 381 TPAIFCRLGSEGTAA------FLSDVRRITPGVVVFVDGEGWTEAAAAASFRRGVVNSLE 434
P + + E + L V+ ++P VV + E T + F + +LE
Sbjct: 532 -PYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTN---TSPFFNRFMETLE 699
Query: 435 FYSMMLESLDASVAAGGGGEWARRIEMLLLRPKIIAAVEAAGRRTT-------PWREAFY 487
+Y+ M ES+D VA + E + I+ V G W+ F
Sbjct: 700 YYTAMFESID--VACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFS 873
Query: 488 GAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWR 541
AG + LS + LL + + +R L L W +RA+V +SAWR
Sbjct: 874 MAGFKQWPLSSSVMTATQNLLRDFN-HNYRLEQRDGALCLGWMKRALVTSSAWR 1032
>TC19345 similar to UP|O81316 (O81316) F6N15.20 protein (SCARECROW-like 6)
(SCL6) (AT4g00150/F6N15_20), partial (12%)
Length = 520
Score = 63.2 bits (152), Expect = 1e-10
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +1
Query: 457 RRIEMLLLRP---KIIAAVEAAGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQI 513
++IE + P K I + + PWR F G P S F + QAECL+ + +
Sbjct: 1 QKIERHFILPDMKKTIFGHNHSHEKLPPWRSMFLQYGFSPFTFSNFTESQAECLVQRAPV 180
Query: 514 RGFHVAKRQAELVLFWHERAMVATSAWRC 542
RGF + ++ + VL W ++ +++ S WRC
Sbjct: 181 RGFQLERKHSSFVLCWQQKELISVSTWRC 267
>TC11652 similar to UP|O81316 (O81316) F6N15.20 protein (SCARECROW-like 6)
(SCL6) (AT4g00150/F6N15_20), partial (10%)
Length = 447
Score = 62.8 bits (151), Expect = 1e-10
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +3
Query: 492 RPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC 542
RP S F + QAECL+ + +RGFHV KRQ+ LVL W + +++ S WRC
Sbjct: 81 RPCHFSNFTESQAECLVQRTPVRGFHVEKRQSSLVLCWQRKDLISISTWRC 233
>TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (33%)
Length = 556
Score = 50.1 bits (118), Expect = 9e-07
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Frame = +2
Query: 193 NHLQLAQAILERLNQRLRSPTGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSSMVEIVQT 252
NH +LA +++ + S G + + A +F AL + G P + S + V
Sbjct: 14 NH-KLADTLVKHIGVVAASQAGA-MRKVASYFAQALARRIYG---IFPDTVDSSLHDVLH 178
Query: 253 IRTFKAFSGISPIPMFSIFTTNQALLEALHGSLYMHVVDFEIGLGIQYASLMKEIAEKAV 312
+ +++ P F+ FT NQA+LEA + +HVVDF + G+Q+ +LM+ +A +
Sbjct: 179 MHFYES----CPYLKFAHFTANQAILEAFATAGRVHVVDFGLKQGMQWPALMQALALRP- 343
Query: 313 NGSPLLRITAVVPEEYAVESRL--IRENLNQFAHDLGIRVQ 351
G P R+T + P + L + L Q A +G++ +
Sbjct: 344 GGPPTFRLTGIGPPQPDNSDALQQVGWKLAQLAQTIGVQFE 466
>AV770800
Length = 514
Score = 47.8 bits (112), Expect = 5e-06
Identities = 37/117 (31%), Positives = 53/117 (44%), Gaps = 7/117 (5%)
Frame = -1
Query: 432 SLEFYSMMLESLDASVAAGGGGEWARRIEMLLLRPKIIAAVEAAG----RRTTP---WRE 484
+L +YS + +SL+ G E + + + L+ +I V G R P WRE
Sbjct: 475 ALHYYSTVFDSLE-----GCPVEPDKALAEMYLQREICNVVCCEGTARVERHEPLAKWRE 311
Query: 485 AFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWR 541
AG RPV L A QA L G+ V +++ L L WH R +A SAW+
Sbjct: 310 RLGKAGFRPVHLGSDAFTQASMLFTLFSSEGYCVEEKEGCLTLGWHSRPPLAASAWQ 140
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 43.5 bits (101), Expect = 9e-05
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 482 WREAFYGAGMRPVQLSQFADFQAECLLAKVQIR-GFHVAKRQAELVLFWHERAMVATSAW 540
WR AG PV L A QA LLA G+ V + L+L WH R ++ATSAW
Sbjct: 139 WRTRMGSAGFNPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAW 318
Query: 541 R 541
+
Sbjct: 319 K 321
>AV414168
Length = 208
Score = 41.2 bits (95), Expect = 4e-04
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 268 FSIFTTNQALLEALHGSLYMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRITAV 323
F + N A+ EA+ +H++DF+I G Q+ SL++ +A + G P +RIT V
Sbjct: 7 FGYMSANGAIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRP-GGPPKVRITGV 171
>CN825078
Length = 650
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Frame = +3
Query: 262 ISPIPMFSIFTTNQALLEALHGSLYMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRIT 321
I P F N A+ EA +H++DF+I G Q+ +L++ +A + G+P +RIT
Sbjct: 222 ICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARP-GGAPHVRIT 398
Query: 322 AV--VPEEYAVESRL--IRENLNQFAHDLGIRVQVDFVPL 357
+ +YA L + + L + GI V+ VP+
Sbjct: 399 GIDDPVSKYARGDGLDIVGKRLALMSEKFGIPVEFHGVPV 518
>AV416351
Length = 428
Score = 40.4 bits (93), Expect = 7e-04
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +3
Query: 2 RVPPPAVSSSSSSPQPKLTTTQNIVVNVPTPNPTPTPTTTTL-------CYEPRSVLELC 54
R PPP SSSSSP+ K N +N P+PTP + T+ P+S L
Sbjct: 99 RPPPPPPPSSSSSPEKK-----NSPINHVLPSPTPHQSPKTIRQSDLSPMNSPKSKLS-A 260
Query: 55 RSPSPEKKPSQQEQEHNPEVEQE 77
R PSP P Q + P V E
Sbjct: 261 RPPSPLTLPPSQLKTEEPNVPDE 329
>AU251563
Length = 350
Score = 37.0 bits (84), Expect = 0.008
Identities = 22/60 (36%), Positives = 30/60 (49%)
Frame = +3
Query: 4 PPPAVSSSSSSPQPKLTTTQNIVVNVPTPNPTPTPTTTTLCYEPRSVLELCRSPSPEKKP 63
PPP S+S+SS + + PTP P+P TTTL R+ L +P+P K P
Sbjct: 75 PPPHQSTSASSSLRTTCLPSPLPPSPPTPATAPSPPTTTL----RASLPAAPTPTPTKTP 242
Score = 33.9 bits (76), Expect = 0.069
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +3
Query: 5 PPAVSSSSSSPQPKLTTTQNIVVNVPTPNPTPTPTT 40
PP+ + +++P P TT + + PTP PT TP T
Sbjct: 141 PPSPPTPATAPSPPTTTLRASLPAAPTPTPTKTPKT 248
>TC12471 similar to GB|AAA59875.1|188864|HUMMUC2A mucin {Homo sapiens;} ,
partial (5%)
Length = 851
Score = 36.2 bits (82), Expect = 0.014
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -3
Query: 208 RLRSPTGKPLHRAAFHF 224
RLR+PTGKPL RAAFHF
Sbjct: 402 RLRTPTGKPLQRAAFHF 352
Score = 33.1 bits (74), Expect = 0.12
Identities = 32/119 (26%), Positives = 46/119 (37%), Gaps = 1/119 (0%)
Frame = -2
Query: 128 DQTQDFTSLSDIYSNNQNLAYNYPNTNTNLDHLVNDFNNNQPNNNTNSNWDFIEELIRAA 187
D D+Y N +NYP + N NNN N I +LIR
Sbjct: 583 DXNSIMNDTGDMYCYN----FNYPTID------------NHHNNNINGLDSIIVDLIRTG 452
Query: 188 DCFDNNHLQ-LAQAILERLNQRLRSPTGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSS 245
D FD N + + ++ N ++P+ + +LQSL SG NPP +S
Sbjct: 451 DRFDTNRRR*YWRGSIKATNSHRKAPSASGV---------SLQSLFSG---LNPPPFTS 311
>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II , partial
(6%)
Length = 583
Score = 35.8 bits (81), Expect = 0.018
Identities = 23/80 (28%), Positives = 32/80 (39%)
Frame = -1
Query: 4 PPPAVSSSSSSPQPKLTTTQNIVVNVPTPNPTPTPTTTTLCYEPRSVLELCRSPSPEKKP 63
PPP SS SP P T+ N P PTP P ++ P + SPS + P
Sbjct: 352 PPPPPSSPPMSPSPTATSPPTSSPNTHPPTPTPNP*SSP---SPSTTTASSASPSTKTLP 182
Query: 64 SQQEQEHNPEVEQEDHASLP 83
S + + + +S P
Sbjct: 181 STRPRPASESPTSSSPSSPP 122
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,308,581
Number of Sequences: 28460
Number of extensions: 159294
Number of successful extensions: 2647
Number of sequences better than 10.0: 267
Number of HSP's better than 10.0 without gapping: 1880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of query: 542
length of database: 4,897,600
effective HSP length: 95
effective length of query: 447
effective length of database: 2,193,900
effective search space: 980673300
effective search space used: 980673300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC148484.4