BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148484.3 + phase: 0 /pseudo
(341 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071106 69 1e-12
TC10419 similar to UP|Q41113 (Q41113) bZIP transcriptional repre... 41 3e-04
TC12431 similar to UP|Q86QS5 (Q86QS5) Ribosomal protein L10, par... 30 0.76
TC19949 UP|Q8H0D4 (Q8H0D4) Rac GTPase, partial (33%) 30 0.76
AV426624 30 0.76
AV425960 29 1.00
TC13862 28 1.7
AV425976 28 2.2
TC14818 weakly similar to UP|Q8S999 (Q8S999) Glucosyltransferase... 28 2.9
TC14286 homologue to UP|O65357 (O65357) Aquaporin 2, complete 27 4.9
BP043648 27 6.5
TC15339 similar to UP|Q84VJ1 (Q84VJ1) Biostress-resistance-relat... 27 6.5
TC15072 27 6.5
BP051395 27 6.5
AV417168 27 6.5
BP063472 27 6.5
TC17919 similar to UP|KPYA_RICCO (Q43117) Pyruvate kinase isozym... 27 6.5
BP036039 27 6.5
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 27 6.5
AV419836 26 8.4
>BP071106
Length = 402
Score = 68.6 bits (166), Expect = 1e-12
Identities = 40/67 (59%), Positives = 44/67 (64%)
Frame = +1
Query: 32 HIQIGQPPCRPTIILEPLRLPIMPQLWLHQPRILICGEASIL*WHHTGLQFRILQCSLLG 91
HIQ G PCR ++LE L L MPQL L Q I I GEASI *+HH L F I C LLG
Sbjct: 190 HIQTGPAPCRLIMLLESLHLLFMPQLLLPQLSIPIYGEASIP*FHHMVLLFLIQLCILLG 369
Query: 92 ISMLILA 98
+SMLILA
Sbjct: 370 LSMLILA 390
>TC10419 similar to UP|Q41113 (Q41113) bZIP transcriptional repressor ROM1,
partial (7%)
Length = 453
Score = 40.8 bits (94), Expect = 3e-04
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +1
Query: 318 SLHLKTILLRKTWNGCVGLK*LLT 341
SLHLK +LLRK+W GCVG K LLT
Sbjct: 1 SLHLKIVLLRKSWTGCVGQKQLLT 72
>TC12431 similar to UP|Q86QS5 (Q86QS5) Ribosomal protein L10, partial (46%)
Length = 380
Score = 29.6 bits (65), Expect = 0.76
Identities = 14/51 (27%), Positives = 25/51 (48%)
Frame = -3
Query: 22 RKYQHQQYNHHIQIGQPPCRPTIILEPLRLPIMPQLWLHQPRILICGEASI 72
+ Y H + H+Q+ +P CR + + P+R + +L H GEA +
Sbjct: 375 KPYHHNHWRAHLQLQRPLCRHHLAIGPVRDDLACRLERHVLLAREAGEAPV 223
>TC19949 UP|Q8H0D4 (Q8H0D4) Rac GTPase, partial (33%)
Length = 549
Score = 29.6 bits (65), Expect = 0.76
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 3/37 (8%)
Frame = -1
Query: 295 WRRWEVRI---ELSEKSFRNFLKSVRSLHLKTILLRK 328
WRRW++R+ EL + + R+LH + ILL K
Sbjct: 132 WRRWKLRVRKWELKRIEIKERERDTRTLHAREILLLK 22
>AV426624
Length = 422
Score = 29.6 bits (65), Expect = 0.76
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 3/37 (8%)
Frame = -3
Query: 295 WRRWEVRI---ELSEKSFRNFLKSVRSLHLKTILLRK 328
WRRW++R+ EL + + R+LH + ILL K
Sbjct: 159 WRRWKLRVRKWELKRIEIKERERDTRTLHAREILLLK 49
>AV425960
Length = 394
Score = 29.3 bits (64), Expect = 1.00
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 199 LDPFLNHLFLEILLSRYLQLILILEWTYGMHLLL 232
LDP HL ++L R+ L LI W +G+HLL+
Sbjct: 294 LDPLPKHLLKDLLCYRF-GLDLIDFWQFGLHLLM 196
>TC13862
Length = 535
Score = 28.5 bits (62), Expect = 1.7
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 102 LQVLCTKLQSLKGRDLMERIRIHLKNRRALLQIQAPKQERVERQDQVQ 149
++ LC L+S GR+L E +++ L++RR + K+E ++ Q+Q
Sbjct: 25 VEKLCFALES--GRELDESLKLELESRRQAVSTLIEKEECNAKRTQIQ 162
>AV425976
Length = 306
Score = 28.1 bits (61), Expect = 2.2
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +2
Query: 9 TKPSKTSSSTQTNRKYQHQQYNHHIQIGQPPCRPTIILEPLRLPIMPQLWLHQPR 63
+KP++ T++ +Y H Q ++ P P I P LP M +L HQPR
Sbjct: 80 SKPTRPPQPTRSQHQYSHHQ-PLRVRPESPRLDPGI--HPASLPRMGRLPRHQPR 235
>TC14818 weakly similar to UP|Q8S999 (Q8S999) Glucosyltransferase-10,
partial (24%)
Length = 805
Score = 27.7 bits (60), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 284 SRPSVKNYKRGWRRWEVRIELSEKSFRNFLKSVRSLHLKTILLRKTWNG 332
S ++ NY WR + R+E ++ F F+ + T LR+ WNG
Sbjct: 433 SHNAIGNYATHWRPFR*RVEFVDQLFEGFIT------MLTS*LRQ*WNG 305
>TC14286 homologue to UP|O65357 (O65357) Aquaporin 2, complete
Length = 1278
Score = 26.9 bits (58), Expect = 4.9
Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Frame = +2
Query: 43 TIILEPLRLPIMP--QLWLHQPRILICGEASIL*WHHTGLQFRILQCSLLGISMLILA 98
+++L P +P +P + WLH P L+C S W + Q +L +LLG+ L+L+
Sbjct: 662 SLLLIPKEVPEIPMCRFWLHFPLDLLC---SWFTWPPS--QSLVLALTLLGVLELLLS 820
>BP043648
Length = 403
Score = 26.6 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 267 RRENSLIESQPGGQDYASRPSVKNYKRGW--RRW 298
RR+ S E+Q G+ + R ++ +RGW RRW
Sbjct: 315 RRQESSTEAQRAGRRRSFRRGGRHRRRGWMRRRW 214
>TC15339 similar to UP|Q84VJ1 (Q84VJ1) Biostress-resistance-related protein
(Fragment), partial (59%)
Length = 1111
Score = 26.6 bits (57), Expect = 6.5
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Frame = +1
Query: 150 AMMAFHIVVTVVQR-----VHLMLAMKTNRNQLETRREALTSCLLMEPTRRTILLDPFLN 204
A++ H+ + V++ H++ K N QL A + P+ LL LN
Sbjct: 106 ALLPRHLFLLVLEEHLSMEEHMLSGQKVNTKQL*FGYMASVIMAPVGPSY*RHLLFQILN 285
Query: 205 HLFLEILLSRYLQLILIL-------------------EWTYGMHLLLVLKPPK*DTINLV 245
+L S+YL L+ L W +H+L + P T++LV
Sbjct: 286 GYVQLLLPSQYLYLVAFLLLLGLMWETCQKMLLMI*KVWMLQLHMLQICCPQNLQTLSLV 465
Query: 246 LLEL 249
L +L
Sbjct: 466 LEDL 477
>TC15072
Length = 721
Score = 26.6 bits (57), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +3
Query: 207 FLEILLSRYLQLILILEWTYGMHL 230
FLE+L + +L L+ L W +G HL
Sbjct: 309 FLELL*T*FLNLLPCLSWKFGTHL 380
>BP051395
Length = 482
Score = 26.6 bits (57), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 201 PFLNHLFLEILLSRYLQLILILEWTYGMH 229
P L+H+ + Y+ L L+W Y MH
Sbjct: 87 PVLHHILYYFITRNYIPFSL*LDWIYFMH 1
>AV417168
Length = 395
Score = 26.6 bits (57), Expect = 6.5
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +3
Query: 25 QHQQYNHHIQIGQPPC 40
++ +YNHH Q QPPC
Sbjct: 336 KNHRYNHHQQPQQPPC 383
>BP063472
Length = 459
Score = 26.6 bits (57), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 4/32 (12%)
Frame = -2
Query: 23 KYQHQQYNHHIQIGQPPCRP----TIILEPLR 50
K HQQ H + PP P +++LEPLR
Sbjct: 437 KQNHQQKIHTLHHSNPPLHPCSHLSLLLEPLR 342
>TC17919 similar to UP|KPYA_RICCO (Q43117) Pyruvate kinase isozyme A,
chloroplast precursor , partial (11%)
Length = 566
Score = 26.6 bits (57), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +1
Query: 15 SSSTQTNRKYQHQQYNH---HIQIGQPPCRP 42
S++TQ N + + H HI I PPC+P
Sbjct: 70 SNTTQHNHLHHKTSFIHSHIHIHIHNPPCQP 162
>BP036039
Length = 436
Score = 26.6 bits (57), Expect = 6.5
Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 313 LKSVRSLHL-KTILLRKTWN 331
+++VRSLH+ K I+L+ TWN
Sbjct: 411 IEAVRSLHIRKLIILKSTWN 352
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 26.6 bits (57), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 10 KPSKTSSSTQTNRKYQHQQYNHHIQIGQPPCRP 42
+PS+ + TQ R++ HH Q QPP +P
Sbjct: 359 RPSRLPNPTQLRRRHLRPLQRHHQQ--QPPSKP 451
>AV419836
Length = 175
Score = 26.2 bits (56), Expect = 8.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 1 MGTKEDSTTKPSKTS 15
MGT E+ST KPSK+S
Sbjct: 131 MGTGEESTAKPSKSS 175
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.335 0.144 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,812,596
Number of Sequences: 28460
Number of extensions: 109272
Number of successful extensions: 1082
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of query: 341
length of database: 4,897,600
effective HSP length: 91
effective length of query: 250
effective length of database: 2,307,740
effective search space: 576935000
effective search space used: 576935000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148484.3