Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148482.6 - phase: 0 
         (402 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, ...   607  e-174
TC17875 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, ...   145  1e-35
AV424389                                                              140  4e-34
TC12675 similar to UP|Q8HBE5 (Q8HBE5) Cytochrome b (Fragment), p...    85  1e-22
TC19486 similar to UP|Q9SJ74 (Q9SJ74) Expressed protein, partial...   100  3e-22
AU251853                                                              100  6e-22
TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, parti...    76  9e-15
AV771599                                                               50  9e-07
TC14165                                                                41  4e-04
TC13507                                                                37  0.004
BF177747                                                               37  0.008
BP055490                                                               33  0.11
AV778440                                                               30  0.93
TC10233 similar to UP|Q84ZV0 (Q84ZV0) R 14 protein, partial (32%)      29  1.2
AV777294                                                               28  2.7
AV781302                                                               28  3.6
TC11753 weakly similar to AAS55571 (AAS55571) At3g09690, partial...    28  3.6
TC17008 similar to UP|Q9LK21 (Q9LK21) Genomic DNA, chromosome 3,...    28  3.6
BG662473                                                               27  4.6

>TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, partial
           (44%)
          Length = 1606

 Score =  607 bits (1565), Expect = e-174
 Identities = 295/397 (74%), Positives = 338/397 (84%), Gaps = 1/397 (0%)
 Frame = +2

Query: 6   RFMFLISILMFVTTTLAQTTTQTCKSQNFTNNAIFTSCRDLPQLTSYLHWTYDQTTGKLD 65
           RF+  IS+L  V  T   ++ QTC SQ FTNN  FTSCRDLP LTSYLHWT+DQ TGKLD
Sbjct: 131 RFVLAISVLCSVFLT---SSAQTCNSQTFTNNKQFTSCRDLPHLTSYLHWTFDQATGKLD 301

Query: 66  IAFRHKGITDTNRWVAWAINPNNDLASSMNGAQALVAILQSSGTPKAYTSSIANSRTQLA 125
           IAFRH GIT T++WV+WAINP+++L S+M GAQALVAI QSSG+PK YT+SIAN    +A
Sbjct: 302 IAFRHTGITSTDKWVSWAINPSSNLNSAMVGAQALVAIPQSSGSPKVYTTSIANYDPNMA 481

Query: 126 ESNISYPHSGLIATHENNEVTIYASITLPVGTPSLVHLWQDGAMSGSTPQMHDMTSANTQ 185
           E NISYPH+GL AT+ N+E+TIYA++TLP GT SLVHLWQDGA+SGST Q H   +AN Q
Sbjct: 482 EGNISYPHTGLSATYSNSELTIYATLTLPSGTTSLVHLWQDGAVSGSTLQAHARGTANLQ 661

Query: 186 SKESLDLRSGASEQGSGGGSLSRRRNTHGVLNAISWGILMPLGAVIARYLKVFKSADPAW 245
           +KESLDL SG ++ GS G S+ RRRN HGVLN +SWGILMPLGAVIARYLKVFKSADPAW
Sbjct: 662 AKESLDLASGTTQAGSSGNSVRRRRNVHGVLNTVSWGILMPLGAVIARYLKVFKSADPAW 841

Query: 246 FYLHVTCQSAAYIVGVAGWGTGLKLGSDSAGVTYSTHRTLGIVIFCLGTLQVFALLLRPK 305
           FYLHVTCQ+AAYIVGVAGWGTGLKLGSDSAG+ YSTHR LGI +FCLGTLQVFALLLRP 
Sbjct: 842 FYLHVTCQTAAYIVGVAGWGTGLKLGSDSAGIEYSTHRALGITLFCLGTLQVFALLLRPN 1021

Query: 306 KDHKIRFYWNLYHWGVGYATIIISIINIFKGFEALEVSAADRYDNWKHAYTGIIAALGGV 365
           KDHKIRFYWNLYHWG+GYATIIISI+NIFKGF+A+E S  DRYD+WK+AY GIIAALGG+
Sbjct: 1022KDHKIRFYWNLYHWGIGYATIIISIVNIFKGFDAMEKSVGDRYDDWKNAYIGIIAALGGI 1201

Query: 366 AVLLEAYTWIIVIKRKKSENKLQGMNGTNG-NGYGSR 401
           AVLLE YTWIIV+KR+KSEN++   +G NG NGYGSR
Sbjct: 1202AVLLEVYTWIIVLKRRKSENQM--AHGANGVNGYGSR 1306


>TC17875 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, partial
           (19%)
          Length = 567

 Score =  145 bits (366), Expect = 1e-35
 Identities = 69/98 (70%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
 Frame = +1

Query: 299 ALLLRPKKDHKIRFYWNLYHWGVGYATIIISIINIFKGFEALEVSAADRYDNWKHAYTGI 358
           AL LR  KDHK RFYWN+YH  +GY+TIIISIIN+FKGF+ LE    DRYDNWK+AY GI
Sbjct: 1   ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 180

Query: 359 IAALGGVAVLLEAYTWIIVIKRKKSENKL-QGMNGTNG 395
           IAALGG+AVLLEAYTWIIV+KR++SE+K   G+NG +G
Sbjct: 181 IAALGGIAVLLEAYTWIIVLKRRQSESKTSHGINGAHG 294


>AV424389 
          Length = 309

 Score =  140 bits (353), Expect = 4e-34
 Identities = 72/101 (71%), Positives = 84/101 (82%), Gaps = 1/101 (0%)
 Frame = +2

Query: 64  LDIAFRHKGITDTNRWVAWAINPNNDLASSMNGAQALVAILQSS-GTPKAYTSSIANSRT 122
           LDIA+RH GIT TNRWVAWAINPNN L  +M GAQALVAI QSS G+P+AYTSSIA++ T
Sbjct: 5   LDIAYRHTGITSTNRWVAWAINPNNKLNPAMVGAQALVAIPQSSDGSPRAYTSSIASTNT 184

Query: 123 QLAESNISYPHSGLIATHENNEVTIYASITLPVGTPSLVHL 163
           QL E  ISYP SGL A ++NNEVTI+A++TLP GT SLVH+
Sbjct: 185 QLQEGTISYPVSGLSAEYQNNEVTIFATLTLPNGTTSLVHV 307


>TC12675 similar to UP|Q8HBE5 (Q8HBE5) Cytochrome b (Fragment), partial (5%)
          Length = 524

 Score = 84.7 bits (208), Expect(2) = 1e-22
 Identities = 40/68 (58%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
 Frame = +3

Query: 4   NLRFMFLISIL--MFVTTTLAQTTTQTCKSQNFTNNAIFTSCRDLPQLTSYLHWTYDQTT 61
           NL+ +  +SIL  + +TT+LAQT    CK+Q F+ N +FT+CRDLP+LTSYLHW+YDQ T
Sbjct: 273 NLKLVLALSILSSVLLTTSLAQT----CKTQTFSTNKVFTTCRDLPELTSYLHWSYDQAT 440

Query: 62  GKLDIAFR 69
           G LDIA+R
Sbjct: 441 GNLDIAYR 464



 Score = 38.5 bits (88), Expect(2) = 1e-22
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 72  GITDTNRWVAWAINPNN 88
           GIT TNRWV WAINPNN
Sbjct: 472 GITSTNRWVDWAINPNN 522


>TC19486 similar to UP|Q9SJ74 (Q9SJ74) Expressed protein, partial (31%)
          Length = 510

 Score =  100 bits (250), Expect = 3e-22
 Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
 Frame = +1

Query: 267 GLKLGSDSAGVTYSTHRTLGIVIFCLGTLQVFALLLRPKKDHKIRFYWNLYHWGVGYATI 326
           G++LG  S GV Y  HR LGI +FCLG +Q  ALL RP + ++ R YW  YH  VGY+ +
Sbjct: 4   GIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSCV 183

Query: 327 IISIINIFKGFEALEVSAADRYDNWKHAYTGIIAALGGVAVLLEAYTWIIVIKRKKSEN- 385
           ++  +N+F+GFE +  S +      K +Y   ++ + GV + LE  +W++  ++ K +  
Sbjct: 184 VLGFVNVFQGFEVMGASRSYA----KLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDKM 351

Query: 386 KLQGMNGTNGNG 397
           + +G+ G++  G
Sbjct: 352 RREGLIGSSDKG 387


>AU251853 
          Length = 286

 Score =  100 bits (248), Expect = 6e-22
 Identities = 48/91 (52%), Positives = 58/91 (62%), Gaps = 1/91 (1%)
 Frame = +3

Query: 1   MVKNLRFMFLISILMFVTTTLAQTTTQTCKSQNFTNNAIFTSCRDLPQLTSYLHWTYDQT 60
           M+  + F F +   + +TTT A T T  C    F N  +F +CRDLP   S+LHWTY   
Sbjct: 15  MLMRVAFCFSVFTSLILTTT-AHTQTCRCSKYTFPNKEVFATCRDLPHSPSFLHWTYQPA 191

Query: 61  TGKLDIAFRHKGITD-TNRWVAWAINPNNDL 90
           TG LDIAFRH GI + TN WVAWAINPNN+L
Sbjct: 192 TGNLDIAFRHSGIENPTNTWVAWAINPNNNL 284


>TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, partial (10%)
          Length = 901

 Score = 76.3 bits (186), Expect = 9e-15
 Identities = 55/206 (26%), Positives = 90/206 (42%), Gaps = 1/206 (0%)
 Frame = +2

Query: 8   MFLISILMFVTTTLAQTTTQTCKSQNFTNNAIFTSCRDLPQLTSYLHWTYDQTTGKLDIA 67
           +F ISI +F++      +   C +Q   +   + SC +L  L + LH+TY++T   + +A
Sbjct: 20  IFAISISIFISLFSPTHSAINCATQKLPSGRNYASCTNLSSLGATLHFTYNETNSSIAVA 199

Query: 68  FRHKGITDTNRWVAWAINPNNDLASSMNGAQALVAILQSSGTPKAYTSSIANSRTQLAE- 126
           F          WVAW +N        M G QALVA                 S ++LAE 
Sbjct: 200 F--SAAPPKGGWVAWGLNL---AGGGMAGTQALVAYKGGDKNVVGVHLYNITSYSELAEV 364

Query: 127 SNISYPHSGLIATHENNEVTIYASITLPVGTPSLVHLWQDGAMSGSTPQMHDMTSANTQS 186
            + S+    L A   +  +TI+A++ +P    ++  +WQ G +       HD    N  +
Sbjct: 365 KSFSFETWDLSAEESSAAITIFAAVKVPENADNISQIWQVGPVVSGKINKHDFKPENLAA 544

Query: 187 KESLDLRSGASEQGSGGGSLSRRRNT 212
           K  L + +  +  G GG + S   NT
Sbjct: 545 KAPLSVVATTAVVG-GGNTTSGSGNT 619


>AV771599 
          Length = 535

 Score = 49.7 bits (117), Expect = 9e-07
 Identities = 20/28 (71%), Positives = 25/28 (88%)
 Frame = -3

Query: 328 ISIINIFKGFEALEVSAADRYDNWKHAY 355
           ISI+NIFKGF+A+E S  DRYD+WK+AY
Sbjct: 533 ISIVNIFKGFDAMEKSVGDRYDDWKYAY 450


>TC14165 
          Length = 431

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 18/28 (64%), Positives = 23/28 (81%)
 Frame = +3

Query: 355 YTGIIAALGGVAVLLEAYTWIIVIKRKK 382
           Y GIIAALGG+AVLLE YTWI  ++ ++
Sbjct: 3   YIGIIAALGGLAVLLEVYTWIPCLEEEE 86


>TC13507 
          Length = 413

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 17/49 (34%), Positives = 29/49 (58%)
 Frame = +3

Query: 349 DNWKHAYTGIIAALGGVAVLLEAYTWIIVIKRKKSENKLQGMNGTNGNG 397
           + ++  Y  ++  LG + ++LE  TWI+V+KRK   +K    +G N NG
Sbjct: 9   EKYRAIYLDVLLILGALVLVLEVLTWIVVLKRKYC-SKSNTYDGYNNNG 152


>BF177747 
          Length = 264

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 135 GLIAT-HENNEVTIYASITLPVGTPSLVHLWQDGA-MSGSTPQMHDMTSANTQSKESLDL 192
           G +AT H    + IYA+I L      + ++W  G  + G +P +H  TS++  S  + D+
Sbjct: 20  GKMATIHNGATIQIYATIKLQPNRTKIHYVWNRGLYVQGYSPTIHPTTSSDLSSTATFDV 199

Query: 193 RSGAS 197
            SG+S
Sbjct: 200 LSGSS 214


>BP055490 
          Length = 547

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 30/111 (27%), Positives = 47/111 (42%)
 Frame = -1

Query: 141 ENNEVTIYASITLPVGTPSLVHLWQDGAMSGSTPQMHDMTSANTQSKESLDLRSGASEQG 200
           +NN ++ Y S +     PS+ HL+   ++   + Q     + +  S  SL LRS AS   
Sbjct: 388 KNNFLSNYYSPSTYSSNPSIAHLFTAPSVQNGSLQSSPSLTFSQVSLPSLHLRSPASLSF 209

Query: 201 SGGGSLSRRRNTHGVLNAISWGILMPLGAVIARYLKVFKSADPAWFYLHVT 251
           S   S   R               +PL     ++++ F S  P +FYLH T
Sbjct: 208 SPSPSNPSR---------------LPL----PKFVEKFNSKSPNFFYLHFT 113


>AV778440 
          Length = 489

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 4/79 (5%)
 Frame = -1

Query: 86  PNNDLASSMNGAQALVAILQSSGTPKAYTSSIANSRTQL----AESNISYPHSGLIATHE 141
           P  D+ S+    + L A+ + +    A   SI  SR +L     E N   P+SG++   E
Sbjct: 351 PVADVESASVHLKHLAAVAKDA---VAEGGSIPGSRAKLWRRIREFNACIPYSGVLPNIE 181

Query: 142 NNEVTIYASITLPVGTPSL 160
             EVT+ A IT+    P+L
Sbjct: 180 VPEVTLMALITMLPAAPNL 124


>TC10233 similar to UP|Q84ZV0 (Q84ZV0) R 14 protein, partial (32%)
          Length = 889

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (55%)
 Frame = -2

Query: 277 VTYSTHRTLGIVIFCLGTLQVFALLLRPKKDHKIRFYWN 315
           V  + HR LG +  CLG + + +L++ P+  + +  Y N
Sbjct: 753 VANTRHRALGYITSCLGNIAILSLIICPQLINTLPQYLN 637


>AV777294 
          Length = 628

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 3/45 (6%)
 Frame = +3

Query: 77  NRWVAWAINPNNDLASSMNGAQALVAI---LQSSGTPKAYTSSIA 118
           ++W+A  ++    L S    A+ + A    L++SGTPK+YT ++A
Sbjct: 354 SKWIASILSNRIALPSQEEMAKDIEAFYVSLEASGTPKSYTHNLA 488


>AV781302 
          Length = 533

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
 Frame = -3

Query: 119 NSRTQLAESNISYPHSGLIATHENNEVTIYASITLPVGTPSLVHLWQDGAMSGSTPQMHD 178
           N   Q ++S  + PH        + E TI+   ++PV TP+L   +      G+ P    
Sbjct: 378 NHNNQFSDSRYNQPH-------RDGEGTIHHHHSIPVATPALRGRFL--RRRGAIPATDQ 226

Query: 179 MTSANTQSKESLDLRSGASEQGSGGGSLSRRRNTHGVLNAISW-GILMPLGAVIARYLKV 237
             +A  ++        GA   GS   + + R  +    N + + G+ + L    A    V
Sbjct: 225 TATATRRTGPLYGRNRGARGFGSESETQNGRFRSRVCENGLGFSGVSLSLSLSHAHTGSV 46

Query: 238 FKSADPAWFYLHVT 251
           F      +FY+H T
Sbjct: 45  F-----LFFYIHTT 19


>TC11753 weakly similar to AAS55571 (AAS55571) At3g09690, partial (9%)
          Length = 630

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 11/43 (25%), Positives = 26/43 (59%)
 Frame = -3

Query: 2   VKNLRFMFLISILMFVTTTLAQTTTQTCKSQNFTNNAIFTSCR 44
           V+ L+  +++ I  +V+  +  + T TCK+ +  +++  +SCR
Sbjct: 268 VEYLQPTYVVYISSYVSFHIRNSQTDTCKTSSLVSSSAVSSCR 140


>TC17008 similar to UP|Q9LK21 (Q9LK21) Genomic DNA, chromosome 3, TAC
           clone:K17E12, partial (11%)
          Length = 516

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 235 LKVFKSADPAWFYLHVTCQSAAYI 258
           L V K  D  WF+L  TCQSA ++
Sbjct: 286 LMVDKVLDVDWFHLGTTCQSAIFL 357


>BG662473 
          Length = 434

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 366 AVLLEAYTW---IIVIKRKKSENKLQGMNGTNGNGYGS 400
           A+ +EA+ W   I+    K+  +  +  NG NG+GYGS
Sbjct: 320 ALEMEAFDWDCGILGDAPKRISDGFEVYNGVNGSGYGS 433


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,136,526
Number of Sequences: 28460
Number of extensions: 97007
Number of successful extensions: 548
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of query: 402
length of database: 4,897,600
effective HSP length: 92
effective length of query: 310
effective length of database: 2,279,280
effective search space: 706576800
effective search space used: 706576800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)


Medicago: description of AC148482.6