TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148470.10 - phase: 0 /pseudo
         (598 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU251673                                                               52  2e-07
AV779571                                                               30  1.1
TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transc...    28  3.3
TC14508 similar to AAP86659 (AAP86659) 26S proteasome subunit RP...    28  3.3
AW720443                                                               28  3.3
BP058026                                                               27  7.2
BP068530                                                               27  7.2
AV415922                                                               27  7.2
BP085186                                                               27  7.2

>AU251673 
          Length = 413

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 44/84 (51%), Gaps = 1/84 (1%)
 Frame = +2

Query: 34  CSEVQKVRFGTHMLAEEANDWWVSLLPILEQDDAAMTWAVFRREFLNRYVPEDVRGQKEI 93
           CS+ + V   +  L   A DW+  L           TWA F  EF+NR++P+ VR     
Sbjct: 5   CSDTRAVELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVR 184

Query: 94  EFLELKQGD-MSVTEYAAEFSKSS 116
           +F  L+Q + M+V+EY+A F+  S
Sbjct: 185 DFERLEQAEGMTVSEYSAHFTHLS 256


>AV779571 
          Length = 538

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 21/58 (36%), Positives = 38/58 (65%)
 Frame = -2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LLLLFV 341
           +++  ++L  LLL +L+LLIV ++L + I  V +  +     LLK++LR+Q LL+L +
Sbjct: 321 LIIYHLLLSLLLLLLLLLLIVIMILSLTIE*VLML*V-----LLKMRLRLQQLLILLI 163


>TC16093 weakly similar to UP|PF21_ARATH (Q04088) Possible transcription
           factor PosF21 (AtbZIP59), partial (17%)
          Length = 570

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -1

Query: 301 LLIVSLLLIVHIS-----WVWLYLI*MEKWLLKLQLRVQ*LLLLFV*VVHCLCLVETLKS 355
           LL++ LLL++H+      W+ L L+ +  WLLKL L    LL+L    +  L L+ + KS
Sbjct: 240 LLMLFLLLLLHLLLWLLYWLLLLLLLLLNWLLKLMLV---LLVLLRMNLELLKLLSS*KS 70

Query: 356 I 356
           +
Sbjct: 69  V 67


>TC14508 similar to AAP86659 (AAP86659) 26S proteasome subunit RPN5a,
           partial (96%)
          Length = 1957

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 13/28 (46%), Positives = 16/28 (56%), Gaps = 1/28 (3%)
 Frame = -3

Query: 454 QRGRLNFQLILFPER-SRCRWHLTVCRR 480
           Q GRL F  +    R S CRW L+ CR+
Sbjct: 251 QSGRLGFSRLAHQSRASECRWRLSWCRK 168


>AW720443 
          Length = 406

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +3

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVHISW 314
           L S ++LL  LL*+LVLLIVS LL   I W
Sbjct: 204 LDSRMMLLSTLL*LLVLLIVSPLLSQSIQW 293


>BP058026 
          Length = 389

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 25/31 (79%)
 Frame = -2

Query: 280 DLSEVLVSLIVLL*LLL*ILVLLIVSLLLIV 310
           DL+++ +  ++LL LLL +L+LL++ LLL++
Sbjct: 109 DLNKIHIKSLLLLLLLLLLLLLLLLLLLLLL 17


>BP068530 
          Length = 517

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 21/30 (69%)
 Frame = -2

Query: 298 ILVLLIVSLLLIVHISWVWLYLI*MEKWLL 327
           +L+L ++ LLL++ + WV L L+ +  W+L
Sbjct: 462 VLLLALLFLLLLLRV*WVVLSLVAISAWVL 373


>AV415922 
          Length = 422

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = -1

Query: 288 LIVLL*LLL*ILVLLIVSLLLIVHISWVWL 317
           L++LL LLL +L+LL+ SLL+++ +   W+
Sbjct: 233 LLLLLLLLLLLLLLLLSSLLVLIPLELNWV 144


>BP085186 
          Length = 388

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 13/24 (54%), Positives = 21/24 (87%)
 Frame = +1

Query: 288 LIVLL*LLL*ILVLLIVSLLLIVH 311
           L++LL LLL +L+LL++ LLL++H
Sbjct: 190 LVLLLLLLLLLLLLLLLLLLLLLH 261


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.370    0.166    0.609 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,406,062
Number of Sequences: 28460
Number of extensions: 156261
Number of successful extensions: 2084
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 1264
length of query: 598
length of database: 4,897,600
effective HSP length: 95
effective length of query: 503
effective length of database: 2,193,900
effective search space: 1103531700
effective search space used: 1103531700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 58 (26.9 bits)