BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148469.3 - phase: 0
(338 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8656 similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protei... 461 e-131
TC15384 weakly similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-lik... 368 e-103
TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, par... 161 2e-40
TC8413 weakly similar to UP|Q9ZSE0 (Q9ZSE0) PrMC3, partial (49%) 156 4e-39
TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%) 102 1e-22
AU089411 96 9e-21
TC9128 93 7e-20
TC11788 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 prote... 79 8e-16
TC18964 79 8e-16
TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Ar... 70 4e-13
TC12874 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (... 62 2e-10
AV423956 55 1e-08
TC11011 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 prote... 50 5e-07
TC10961 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (... 37 0.004
AV419982 34 0.040
BP045037 33 0.068
TC14874 weakly similar to UP|MMS2_YEAST (P53152) Ubiquitin-conju... 31 0.26
TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, parti... 29 1.3
TC8491 28 1.7
TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 28 2.9
>TC8656 similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protein, partial
(35%)
Length = 1114
Score = 461 bits (1187), Expect = e-131
Identities = 228/337 (67%), Positives = 264/337 (77%), Gaps = 8/337 (2%)
Frame = +3
Query: 10 IAILSLHLLLLLANVNSSSSMDPYKVLNLIHNPNGTITRLDKYPQSPPSQDPNLPTPSLS 69
I+ SL LLL+L N SSMDPYK LNLI NPNGT+TRL P++PPS P L TP +S
Sbjct: 63 ISAFSLCLLLVLVN----SSMDPYKALNLILNPNGTLTRLQPPPETPPSPHPTLHTPVIS 230
Query: 70 KDLTLNPSKHTWARIYLPHKPT--------SKKLPLIVFYHGGGFIFYSAASTYFHNFCS 121
KDLT+N SK TWARIY+PHK ++LPLIVFYHGGGFI YSAASTYFH+FC+
Sbjct: 231 KDLTINQSKQTWARIYIPHKALVSTLRRHLKRRLPLIVFYHGGGFILYSAASTYFHDFCN 410
Query: 122 NLANQTHSVVVSLEYRLAPEHRLPAAYEDSVEILHWIKTSKDPWLTHHADYSRVYLMGES 181
+AN T SVVVS+ Y LAPEHRLPAAYEDSVE LHWIKTSKD WLT HAD+SR YLMGES
Sbjct: 411 RMANITQSVVVSVNYHLAPEHRLPAAYEDSVEALHWIKTSKDTWLTRHADFSRCYLMGES 590
Query: 182 AGGNIAYTAGLRAAAIVDEIKPVNIKGLILIQPFFGGNKRTASEIRLEKDLNLPLIVTDS 241
AGGNIAY AGLRAA +D+IKP+NIK L+LIQPFFGG KRT+SE+RL +D +P +TD
Sbjct: 591 AGGNIAYFAGLRAATQLDQIKPLNIKALVLIQPFFGGTKRTSSELRLVEDGTIPQPITDM 770
Query: 242 MWNLSLPLGVDRDYEYCNPTVNGGDKVLEKIRLFGWRVAVFGCDGDQLVDRQRELVKLLE 301
MWNLSLP+G DRD+EY NPTV GG KVL++I+ GWRV VFGC+GD LVDRQRELV+LL+
Sbjct: 771 MWNLSLPVGADRDHEYSNPTVKGGPKVLDQIKELGWRVEVFGCEGDPLVDRQRELVQLLK 950
Query: 302 GKSVNVVGQFYSGGRHGIFVGDASMSQKVFDLVNGLH 338
GK V V+G F GG HGIF G+ SMS KVF+ + H
Sbjct: 951 GKGVRVMGYFIEGGHHGIFAGEPSMSIKVFNSLKTFH 1061
>TC15384 weakly similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protein,
partial (21%)
Length = 1193
Score = 368 bits (945), Expect = e-103
Identities = 187/331 (56%), Positives = 235/331 (70%), Gaps = 3/331 (0%)
Frame = +1
Query: 7 ITAIAILSLHLLLLLANVNSSSSMDPYKVLNLIHNPNGTITRLDKYPQSPPSQDPNLPTP 66
+ AI S L ++ + +S DPYK LNLIHNPNG++TR +K P+SPPS +P LP
Sbjct: 58 LITFAIFSSTFLFIVNSSTPNSCNDPYKQLNLIHNPNGSVTRPNKPPESPPSLNPTLPV- 234
Query: 67 SLSKDLTLNPSKHTWARIYLPHKPT--SKKLPLIVFYHGGGFIFYSAASTYFHNFCSNLA 124
LSKDLT+N SK TWARIYLP K S KLPL+VF+HGGGFIF SAAST FH FC N+A
Sbjct: 235 -LSKDLTINKSKGTWARIYLPRKALDHSSKLPLVVFFHGGGFIFLSAASTIFHVFCFNMA 411
Query: 125 NQTHSVVVSLEYRLAPEHRLPAAYEDSVEILHWIKTS-KDPWLTHHADYSRVYLMGESAG 183
N +VV S+EYRLAPEHRLPAAY+D+VE LHWIKT+ KD WL +H +YS V+LMG SAG
Sbjct: 412 NDVEAVVASVEYRLAPEHRLPAAYDDAVEALHWIKTNQKDDWLINHVEYSNVFLMGGSAG 591
Query: 184 GNIAYTAGLRAAAIVDEIKPVNIKGLILIQPFFGGNKRTASEIRLEKDLNLPLIVTDSMW 243
GNIAY AGLRA A ++ NI+GLIL+QPFF G RT SE+R+ D +L L D +W
Sbjct: 592 GNIAYNAGLRATAGDKQVS--NIQGLILVQPFFSGTLRTGSELRMVNDSHLSLCSNDMLW 765
Query: 244 NLSLPLGVDRDYEYCNPTVNGGDKVLEKIRLFGWRVAVFGCDGDQLVDRQRELVKLLEGK 303
LSLP+GV+RD EYCNP V G LE+I+ GWR+ V GC GD L+DRQ LV+L++ +
Sbjct: 766 ELSLPVGVNRDNEYCNPAVGNGPVRLEEIKRLGWRILVTGCSGDPLMDRQVGLVRLMQKE 945
Query: 304 SVNVVGQFYSGGRHGIFVGDASMSQKVFDLV 334
V VVG F G HG+ + ++++F ++
Sbjct: 946 GVRVVGHFTEGDYHGVQDSEPLKAKQLFVVI 1038
>TC15380 similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial (28%)
Length = 1306
Score = 161 bits (407), Expect = 2e-40
Identities = 97/253 (38%), Positives = 142/253 (55%), Gaps = 6/253 (2%)
Frame = +1
Query: 13 LSLHLLLLLANVNSSSSMDPYKVLNLIHNPNGTITR-----LDKYPQSPPSQDPNLPTPS 67
LS+ LL L+N + S NGT+ R LD+ + PP+ P
Sbjct: 118 LSIFLLSALSNTSRRS--------------NGTVNRRIFNLLDR--KVPPNTKP--VDGV 243
Query: 68 LSKDLTLNPSKHTWARIYLPHKPTSK-KLPLIVFYHGGGFIFYSAASTYFHNFCSNLANQ 126
S D+T++P++ W R++ P +S LPL+VF+HGGGF F S +S F C
Sbjct: 244 SSSDVTMDPTRDLWFRLFTPSAASSAASLPLVVFFHGGGFSFMSPSSIQFDTVCRQFCRS 423
Query: 127 THSVVVSLEYRLAPEHRLPAAYEDSVEILHWIKTSKDPWLTHHADYSRVYLMGESAGGNI 186
H+VVVS+ YRLAPEHR P YED + L +I + D L AD + +L G+SAGGN+
Sbjct: 424 FHAVVVSVNYRLAPEHRYPTQYEDGFDALKFIDQNGDV-LPRSADVRKCFLAGDSAGGNL 600
Query: 187 AYTAGLRAAAIVDEIKPVNIKGLILIQPFFGGNKRTASEIRLEKDLNLPLIVTDSMWNLS 246
A+ +R A + ++ + I GLI +QPFFGG +RT SEIRL++ + + ++D W +
Sbjct: 601 AHHVAVRVAR--ERLQSIKIIGLISLQPFFGGEERTGSEIRLKRVPFISVDISDWHWKVF 774
Query: 247 LPLGVDRDYEYCN 259
LP G +RD++ N
Sbjct: 775 LPTGSNRDHDAVN 813
>TC8413 weakly similar to UP|Q9ZSE0 (Q9ZSE0) PrMC3, partial (49%)
Length = 1092
Score = 156 bits (395), Expect = 4e-39
Identities = 89/221 (40%), Positives = 132/221 (59%), Gaps = 4/221 (1%)
Frame = +2
Query: 43 NGTITRLDKYPQS-PPSQDPNLPTPSLSKDLTLNPSKHTWARIYLPHKPTSKKL-PLIVF 100
+G + R D P++ P S P+ SKD+ ++PSK RI+LPH + L P++V+
Sbjct: 35 DGLVKRFD--PETVPASSKPS--NGYKSKDVVIDPSKPITGRIFLPHFENQQNLLPVLVY 202
Query: 101 YHGGGFIFYSAASTYFHNFCSNLANQTHSVVVSLEYRLAPEHRLPAAYEDSVEILHWI-- 158
+HGGGF S +H+F + + + S+V+S++YRLAPEHRLPAAYED L W+
Sbjct: 203 FHGGGFCIGSTTWLGYHHFLGDFSVASQSIVLSVDYRLAPEHRLPAAYEDCYVALQWLAE 382
Query: 159 KTSKDPWLTHHADYSRVYLMGESAGGNIAYTAGLRAAAIVDEIKPVNIKGLILIQPFFGG 218
+ S +PWL AD SRV+L GESAGGNIA+ ++ +++ + I GL++I P+FG
Sbjct: 383 QASSEPWL-QGADISRVFLSGESAGGNIAHHVFVKTTQRNNDVLVLPI*GLMVIHPYFGS 559
Query: 219 NKRTASEIRLEKDLNLPLIVTDSMWNLSLPLGVDRDYEYCN 259
+RT E + D + + D W LS+P +RDY CN
Sbjct: 560 EERTEKEEAVADDDKECVAMNDMFWRLSIPEDSNRDYFGCN 682
>TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%)
Length = 1240
Score = 102 bits (253), Expect = 1e-22
Identities = 53/134 (39%), Positives = 76/134 (56%)
Frame = +3
Query: 43 NGTITRLDKYPQSPPSQDPNLPTPSLSKDLTLNPSKHTWARIYLPHKPTSKKLPLIVFYH 102
+G + RL +PP D T SKD+ +NP AR+YLP + LPL+++ H
Sbjct: 75 DGRVERLMGTDTTPPGTDHL--TAVQSKDVNINPDTGVAARLYLPPN-AANNLPLLIYIH 245
Query: 103 GGGFIFYSAASTYFHNFCSNLANQTHSVVVSLEYRLAPEHRLPAAYEDSVEILHWIKTSK 162
GG F + + +H +N+A + ++VVVS+ YRLAPEH LP AY+D+ E + W
Sbjct: 246 GGAFCICTPYNNAYHRHLNNVAAKANAVVVSVHYRLAPEHPLPIAYDDTWEAIQWAAGLH 425
Query: 163 DPWLTHHADYSRVY 176
DPWL HAD V+
Sbjct: 426 DPWLKDHADPDLVF 467
>AU089411
Length = 448
Score = 95.9 bits (237), Expect = 9e-21
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Frame = +2
Query: 153 EILHWIKTSKDPWLTHHADYSRVYLMGESAGGNIAYTAGLRAAAIVDE-IKPVNIKGLIL 211
++LH K S+ W T ++S VYL G+SAG NI Y R AA ++P+N+KGLIL
Sbjct: 11 QVLHQYKGSE--WWTAKCNFSSVYLAGDSAGANIXYYVATRLAACEGAALRPLNLKGLIL 184
Query: 212 IQPFFGGNKRTASEIRLEKDLN--LPLIVTDSMWNLSLPLGVDRDYEYCNPTVNGGDKVL 269
IQPFFGG T S + + L L +D+ W L+LP G RD+ +CNP V K L
Sbjct: 185 IQPFFGGEVXTVSXKCMAQSPGSALNLAASDTYWRLALPSGAGRDHPWCNPLVXXSLK-L 361
Query: 270 EKIRLFGWRVAVFGCDGDQLVDRQRELVKLL 300
E+++LF V V D L DR L L
Sbjct: 362 EELKLFPTLVCVSXM--DILXDRNLNLCDAL 448
>TC9128
Length = 678
Score = 92.8 bits (229), Expect = 7e-20
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Frame = +2
Query: 43 NGTITRLDKYPQSPPSQDPNLPTPSLSKDLTLNPSKHTWARIYLPHK--PTSKKLPLIVF 100
NG + RL P DP T SKD+ ++ ARI++P P +KLP++V+
Sbjct: 266 NGRVERLAGVDFVPTGLDPK--TNVESKDVVISKEDGISARIFIPKSTNPPPQKLPVLVY 439
Query: 101 YHGGGFIFYSAASTYFHNFCSNLANQTHSVVVSLEYRLAPEHRLPAAYEDSVEILHWIKT 160
+HGG F + S +HN+ +++A+ + + VS+ YR APEH +P A+EDS L W+ +
Sbjct: 440 FHGGAFCIETPFSANYHNYVTSVASLANVIGVSVHYRRAPEHPVPIAHEDSWRALKWVAS 619
Query: 161 -----SKDPWLTHHADYSR 174
DPWL H D+ +
Sbjct: 620 HVGGNGPDPWLNEHGDFGK 676
>TC11788 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial
(15%)
Length = 469
Score = 79.3 bits (194), Expect = 8e-16
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +2
Query: 43 NGTITRLDKYPQSPPSQDPNLPTPSLS-KDLTLNPSKHTWARIYLPHKPT-SKKLPLIVF 100
NGT+ R SQ P +S KD+T++ +++ W R+++P T + LP++VF
Sbjct: 143 NGTVNRRLLNLLDRKSQPNATPVNGVSTKDVTVDAARNLWFRLFIPTSATDTASLPVLVF 322
Query: 101 YHGGGFIFYSAASTYFHNFCSNLANQTHSVVVSLEYRLAPEHRLPAAYE 149
+HGGGF + S AS + C + ++VVS+ YRL PEHR P+ Y+
Sbjct: 323 FHGGGFTYLSPASFAYDAVCRRFCRRVPAIVVSVNYRLCPEHRFPSQYD 469
>TC18964
Length = 397
Score = 79.3 bits (194), Expect = 8e-16
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = +3
Query: 43 NGTITRLDKYPQSPP-SQDPNLPTPSLSKDLTLNPSKHTWARIYLPHK--PTSKKLPLIV 99
+GT+ RL P P DP T SKD+ ++ + ARI+LP + P + K+P+++
Sbjct: 75 DGTVERLLGSPVVPAIPHDPE--TEVSSKDIVISQTPLISARIHLPKQSNPQNPKVPILI 248
Query: 100 FYHGGGFIFYSAASTYFHNFCSNLANQTHSVVVSLEYRLAPEHRLPAAY 148
+YHGG F SA S + + +A++++ VVVS+EYRLAPEH LPAAY
Sbjct: 249 YYHGGAFCLESAFSFLHQRYLNIVASRSNVVVVSVEYRLAPEHPLPAAY 395
>TC11814 similar to GB|AAP37709.1|30725374|BT008350 At5g06570 {Arabidopsis
thaliana;}, partial (23%)
Length = 507
Score = 70.5 bits (171), Expect = 4e-13
Identities = 37/89 (41%), Positives = 50/89 (55%), Gaps = 8/89 (8%)
Frame = +2
Query: 70 KDLTLNPSKHTWARIYLPHKPTSK--------KLPLIVFYHGGGFIFYSAASTYFHNFCS 121
KD + + R+Y P + KLP+I+F HGGGF F S + HN C
Sbjct: 167 KDCLFDKKFNLSLRLYKPSSQNTNNSNHNKNMKLPMIMFLHGGGFCFGSRTWPHIHNCCM 346
Query: 122 NLANQTHSVVVSLEYRLAPEHRLPAAYED 150
LA+ ++VV+ +YRLAPEHRLPAA +D
Sbjct: 347 RLASGLQAMVVAPDYRLAPEHRLPAAVDD 433
>TC12874 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (42%)
Length = 512
Score = 61.6 bits (148), Expect = 2e-10
Identities = 31/81 (38%), Positives = 47/81 (57%), Gaps = 2/81 (2%)
Frame = +3
Query: 82 ARIYLPHK-PTSK-KLPLIVFYHGGGFIFYSAASTYFHNFCSNLANQTHSVVVSLEYRLA 139
AR+Y+P K P K KLP+++ +HGGGF ++ + T S+ VS R A
Sbjct: 267 ARLYMPEKTPDDKHKLPILLHFHGGGFCISEPDCFMYYQIYTRFVRSTRSICVSPFLRRA 446
Query: 140 PEHRLPAAYEDSVEILHWIKT 160
PE+RLPAA +D+ L W+++
Sbjct: 447 PENRLPAAVDDAFATLQWLQS 509
>AV423956
Length = 388
Score = 55.5 bits (132), Expect = 1e-08
Identities = 35/103 (33%), Positives = 47/103 (44%), Gaps = 1/103 (0%)
Frame = +2
Query: 163 DPWLTHHADYSRVYLMGESAGGNIAYTAGLRAAAIVDEIKPVNIKGLILIQPFFGGNKRT 222
+PWL H D +R L+G S G NIA +A + PV + +L+ PFF G+ T
Sbjct: 62 EPWLAAHGDPTRCVLIGASCGANIADYVARKAVEGGKLLDPVKVVAQVLLYPFFVGSVLT 241
Query: 223 ASEIRLEKDLNLPLIVTDSMWNLSLPLG-VDRDYEYCNPTVNG 264
SEI+L + W L LP D+ NP V G
Sbjct: 242 HSEIKLANSYFYDKAMCMLAWKLFLPEDEFSLDHPAANPLVAG 370
>TC11011 weakly similar to UP|Q8H5P5 (Q8H5P5) OJ1003_C06.27 protein, partial
(21%)
Length = 480
Score = 50.1 bits (118), Expect = 5e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 213 QPFFGGNKRTASEIRLEKDLNLPLIVTDSMWNLSLPLGVDRDYEYCN 259
QPFFGG +RT +EI+LE + ++ TD MW + LP G DRD+ N
Sbjct: 1 QPFFGGEERTEAEIKLEGSPLISVVRTDWMWKVFLPDGADRDHGAAN 141
>TC10961 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (35%)
Length = 440
Score = 37.4 bits (85), Expect = 0.004
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 83 RIYLPHKPTSKK--LPLIVFYHGGGFIFYSAASTYFHNFCSNLANQTHSVVVS 133
R+Y+P K + K LP+++ +HGGGF ++ + L T S+ VS
Sbjct: 268 RLYMPEKTSDDKHKLPILLHFHGGGFCISEPDYYMYYQIYTRLVRSTRSICVS 426
>AV419982
Length = 415
Score = 33.9 bits (76), Expect = 0.040
Identities = 20/53 (37%), Positives = 26/53 (48%), Gaps = 8/53 (15%)
Frame = +3
Query: 53 PQSPPSQDPNLPTPSLSKDLTLNPSKHTWAR--------IYLPHKPTSKKLPL 97
P SPPS +PNL T + D + P TW+R ++L H P LPL
Sbjct: 147 PPSPPSTNPNLSTYLYNTD--IGPVSLTWSRSIMGRSLHVHLHHHPFDSPLPL 299
>BP045037
Length = 565
Score = 33.1 bits (74), Expect = 0.068
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 121 SNLANQTHSVVVSLEYR--LAPEHRLPAAYEDSVEILHWIKTSKDPWLTHH 169
SNL ++T V+ E + L+ + ++P VEILHW KDP +HH
Sbjct: 156 SNLHSRTPDKWVNKEQKKKLSLKFKIPTFIRLQVEILHWRSKLKDPHPSHH 308
>TC14874 weakly similar to UP|MMS2_YEAST (P53152) Ubiquitin-conjugating
enzyme variant MMS2 (UEV MMS2), partial (42%)
Length = 1015
Score = 31.2 bits (69), Expect = 0.26
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = -3
Query: 73 TLNPSKHTWARI-YLPHKPTS-KKLPLIVFYHGGGFIFYSAASTYFHNFCSNLANQTHSV 130
++N ++H A + L HK S K L V Y+GG S ++ H+ + HS+
Sbjct: 422 SVNETEHLGAFLDSLYHKTASVDKFFLHVQYYGGQ*WCQSKSACKCHH-----RHPFHSL 258
Query: 131 VVSLEYRLAPEHRLPAAYEDSVEILHWIKTSKDPWL 166
+ L+Y P R+P A S+ HWI S+ W+
Sbjct: 257 LCHLQYLFLP-FRVPPAI*SSLGPRHWILLSQASWI 153
>TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (28%)
Length = 695
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/60 (36%), Positives = 27/60 (44%), Gaps = 6/60 (10%)
Frame = +2
Query: 25 NSSSSMDPYKVLNLIHNPNGTITRLDKYPQSP------PSQDPNLPTPSLSKDLTLNPSK 78
N+SSS P N +P+ T+ L P P PS P LPT K T +PSK
Sbjct: 191 NTSSSQLPPDPSNSNSHPS-TLHPLSPSPPQPTTALPRPSSSPRLPTGPSKKKTTRSPSK 367
>TC8491
Length = 643
Score = 28.5 bits (62), Expect = 1.7
Identities = 30/98 (30%), Positives = 39/98 (39%)
Frame = +1
Query: 204 VNIKGLILIQPFFGGNKRTASEIRLEKDLNLPLIVTDSMWNLSLPLGVDRDYEYCNPTVN 263
V I+GL+ + P+F G +R I E D + +W S P D NP
Sbjct: 28 VRIEGLVYVHPYFWGGER----IGKEGDRPEYVQKVHDLWRFSYPTTSGSDDPLLNP--- 186
Query: 264 GGDKVLEKIRLFGWRVAVFGCDGDQLVDRQRELVKLLE 301
D L K+ RV V D L DR +LLE
Sbjct: 187 AKDPNLGKLAC--GRVLVCVAGNDLLRDRGWYYQELLE 294
>TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (36%)
Length = 1778
Score = 27.7 bits (60), Expect = 2.9
Identities = 19/68 (27%), Positives = 32/68 (46%)
Frame = -2
Query: 10 IAILSLHLLLLLANVNSSSSMDPYKVLNLIHNPNGTITRLDKYPQSPPSQDPNLPTPSLS 69
I L H +LLL +V + + PY +++ H +P +PPS +P P P+
Sbjct: 976 INTLKTHPILLLLHV--TPHLLPYHLMHHRHQLXS*NYPHQTHPPAPPSPEPAPPLPAQD 803
Query: 70 KDLTLNPS 77
K +P+
Sbjct: 802 KSEQPSPA 779
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,758,356
Number of Sequences: 28460
Number of extensions: 112391
Number of successful extensions: 819
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of query: 338
length of database: 4,897,600
effective HSP length: 91
effective length of query: 247
effective length of database: 2,307,740
effective search space: 570011780
effective search space used: 570011780
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148469.3