TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148406.5 - phase: 0 /pseudo
         (363 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19026 similar to UP|Q9SXQ6 (Q9SXQ6) FEN-1, partial (42%)            259  4e-70
AV768524                                                              132  7e-32
TC18225 similar to UP|Q9SXQ6 (Q9SXQ6) FEN-1, partial (17%)            120  3e-28
TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete                  28  1.8
TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, ...    28  3.2
TC17103 homologue to UP|Q9FVD7 (Q9FVD7) Ser/Thr specific protein...    28  3.2
TC18610                                                                27  7.0
AV768947                                                               27  7.0
TC11934 similar to PIR|T08858|T08858 vacuolar protein-sorting pr...    27  7.0
TC19651 similar to UP|Q7QEB6 (Q7QEB6) AgCP7318 (Fragment), parti...    26  9.2
TC13342                                                                26  9.2

>TC19026 similar to UP|Q9SXQ6 (Q9SXQ6) FEN-1, partial (42%)
          Length = 575

 Score =  259 bits (663), Expect = 4e-70
 Identities = 130/144 (90%), Positives = 137/144 (94%)
 Frame = +2

Query: 1   MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 60
           MKENKFESYFGRKIA+DASMSIYQFLIVVGRSG E LTNEAGEVTSHLQGMF RTIRLLE
Sbjct: 143 MKENKFESYFGRKIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTSHLQGMFTRTIRLLE 322

Query: 61  AGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ 120
           +GMKPVYVFDGKPP+MK QEL KRLSKRAEAT  L+EAL+ADNKEDIEKFSKRTVKVTKQ
Sbjct: 323 SGMKPVYVFDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQ 502

Query: 121 HNDDCKRLLRLMGVPVVEAPSEAE 144
           HN+DCK+LLRLMGVPVVEAPSEAE
Sbjct: 503 HNEDCKKLLRLMGVPVVEAPSEAE 574


>AV768524 
          Length = 285

 Score =  132 bits (333), Expect = 7e-32
 Identities = 63/70 (90%), Positives = 68/70 (97%)
 Frame = -3

Query: 183 SKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEK 242
           SKK+PVMEF+VAKILEEL+LTMDQFIDLCILSGCDYCDNIRGIGG TALKLIRQHGSIE 
Sbjct: 283 SKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIEN 104

Query: 243 ILENISKERY 252
           ILENI+KER+
Sbjct: 103 ILENINKERF 74


>TC18225 similar to UP|Q9SXQ6 (Q9SXQ6) FEN-1, partial (17%)
          Length = 528

 Score =  120 bits (302), Expect = 3e-28
 Identities = 59/68 (86%), Positives = 63/68 (91%)
 Frame = +3

Query: 276 DEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANP 335
           D+ LNLKWS PDEEGLITFLVNENGFNSDRVTKAIEKIKAAKN+SSQGRLESFFKP  + 
Sbjct: 6   DDELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNQSSQGRLESFFKPAPSS 185

Query: 336 SVPIKRKQ 343
           SVPIKRK+
Sbjct: 186 SVPIKRKE 209


>TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete
          Length = 1019

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 17/169 (10%)
 Frame = +2

Query: 166 SLTFGAPKFLRHLMDPSS---------KKIPVMEFDVAKILEELDLTMDQFIDLCILSGC 216
           S++FG    +   MD SS         K + + +  V K    L  T D+F D+    G 
Sbjct: 35  SISFGFRSSVDDAMDSSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGV 214

Query: 217 DYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTDD 276
           D+      IGG   LKL         I +   +ER++      Y+ A+ +    +V+  D
Sbjct: 215 DFKVKYVAIGG-KKLKL--------AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 367

Query: 277 EVLNLK--WSP-----PDEEGLITFLV-NENGFNSDRVTKAIEKIKAAK 317
              NL   W+         +  I  LV N+    SDRV    E I  A+
Sbjct: 368 TFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKESDRVVSKKEGIDFAR 514


>TC12868 homologue to UP|AAO25536 (AAO25536) Cellulose synthase, partial
           (34%)
          Length = 1102

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 23/84 (27%), Positives = 37/84 (43%), Gaps = 8/84 (9%)
 Frame = -3

Query: 65  PVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQ---- 120
           P++  D  PPE+KN   +    K  E  AG    L  +NK   ++   R   V+KQ    
Sbjct: 785 PIFYTDPTPPELKNCSSENGDEKENEPHAGKVTYL-WNNKFICDETKSRECTVSKQWD*G 609

Query: 121 ----HNDDCKRLLRLMGVPVVEAP 140
               ++ +  + L  + +PVV  P
Sbjct: 608 EGVDNSVNISKPLEALQLPVVAIP 537


>TC17103 homologue to UP|Q9FVD7 (Q9FVD7) Ser/Thr specific protein
           phosphatase 2A A regulatory subunit alpha isoform,
           partial (19%)
          Length = 685

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 173 KFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFI 208
           K L  ++  S  ++P ++F+VAK+LE +   +DQ +
Sbjct: 122 KLLPVVVSASKDRVPNIKFNVAKVLESIFPILDQSV 229


>TC18610 
          Length = 610

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
 Frame = +3

Query: 81  LKKRLSKRAEATA--GLTEALEADNKEDIEKFSKRTV 115
           L K + K  ++T   GL + +EA  KE +E+F  RTV
Sbjct: 360 LDKIVDKYPQSTTSRGLEQPVEAGEKEKLERFKIRTV 470


>AV768947 
          Length = 490

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +1

Query: 155 KVYAVASEDMD----SLTFGAPKFLRHLMDPSSKKIPVMEF 191
           +V   +SE +D    SL+FGAP+ L+H +  S  K+ ++++
Sbjct: 298 QVSGPSSEALDFEPLSLSFGAPESLKHYLIESR*KLQLLQY 420


>TC11934 similar to PIR|T08858|T08858 vacuolar protein-sorting protein
           homolog A_TM017A05.7 -                Arabidopsis
           thaliana {Arabidopsis thaliana;} , partial (23%)
          Length = 762

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 13/28 (46%), Positives = 18/28 (63%)
 Frame = +2

Query: 108 EKFSKRTVKVTKQHNDDCKRLLRLMGVP 135
           E+ SKR VKVT++  +D +R  R   VP
Sbjct: 101 EERSKRRVKVTRRERNDARRNRRRREVP 184


>TC19651 similar to UP|Q7QEB6 (Q7QEB6) AgCP7318 (Fragment), partial (8%)
          Length = 635

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = +3

Query: 70  DGKPPEMKNQELKKRLSKRAEATAGLTEALE 100
           DGKPP  K Q L++  S R +    L    E
Sbjct: 384 DGKPPSQKPQNLERAASLRGKVVKKLCSLFE 476


>TC13342 
          Length = 549

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 247 ISKERYQVPDDWPYQEARRLFKEPEVSTDDEVLNL 281
           +SK R + PD+    +  RLF E   ST D+   L
Sbjct: 170 LSKRRTKCPDESLL*DGSRLFPESNFSTSDDAYGL 274


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,245,199
Number of Sequences: 28460
Number of extensions: 57303
Number of successful extensions: 285
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of query: 363
length of database: 4,897,600
effective HSP length: 91
effective length of query: 272
effective length of database: 2,307,740
effective search space: 627705280
effective search space used: 627705280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)