BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148406.1 + phase: 0
(114 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10234 29 0.13
TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization ... 28 0.22
TC17732 similar to UP|O80362 (O80362) Chloroplast ribosomal prot... 27 0.63
AV407490 25 1.4
TC18529 25 1.4
TC11906 similar to UP|O82058 (O82058) Glucose-6-phosphate isomer... 25 1.4
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 25 1.8
TC9811 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pro... 25 2.4
AV407527 25 2.4
BP033460 25 2.4
CB827389 25 2.4
AV426985 25 2.4
TC14597 similar to UP|RR1_SPIOL (P29344) 30S ribosomal protein S... 24 3.1
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 24 4.1
CN825728 24 4.1
AV416470 24 4.1
CB828712 23 5.3
AV408408 23 5.3
AI967458 23 5.3
>TC10234
Length = 902
Score = 28.9 bits (63), Expect = 0.13
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = -1
Query: 43 KKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVF 77
KK + G L AKK W LR RGLR LV+
Sbjct: 146 KKIVRIPFLGILAEAKKCGWFWLRMVRGLRFNLVY 42
>TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization 1 homolog a
{Mus musculus;}, partial (3%)
Length = 2631
Score = 28.1 bits (61), Expect = 0.22
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 19 NFPDQNYTMIEKRQLFLRS--YQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKL 75
NF QN + +R++ + S +QFC L +K S + + VW+ +R A G+ L
Sbjct: 123 NFLPQNKSWRVRRRIVMVSTTFQFCLNCLLPMTLKLSREKWMRRVWMSMRQAFGMEEGL 299
>TC17732 similar to UP|O80362 (O80362) Chloroplast ribosomal protein L10,
partial (77%)
Length = 903
Score = 26.6 bits (57), Expect = 0.63
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +3
Query: 83 CGFYYRRRRFSQLLNNSGSSHHRK 106
CG + RRRF + LN +G S R+
Sbjct: 396 CGCLFTRRRFRRRLNPTGISRRRR 467
>AV407490
Length = 403
Score = 25.4 bits (54), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 91 RFSQLLNNSGSSHHRKVDSSSCL 113
RF Q+ N+ SSHH K +S L
Sbjct: 299 RFCQMQNSRFSSHHEKTGQASIL 231
>TC18529
Length = 470
Score = 25.4 bits (54), Expect = 1.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 82 KCGFYYRRRRFSQLLNNSGSSHHRK 106
KCGF + S +L+N HH K
Sbjct: 204 KCGFPFSSEELSAILSNVSVLHHAK 130
>TC11906 similar to UP|O82058 (O82058) Glucose-6-phosphate isomerase
precursor (GPI) (Phosphoglucose isomerase) (PGI)
(Phosphohexose isomerase) (PHI) , partial (9%)
Length = 432
Score = 25.4 bits (54), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 31 RQLFLRSYQFCRKKSLTERIKGSLVRAKKV 60
R+ F+ + + TER++GSLVR KV
Sbjct: 306 RRCFVTAERSAGASRATERVRGSLVRVGKV 217
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 25.0 bits (53), Expect = 1.8
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +2
Query: 37 SYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFF 78
S QFCR S + S V AKK + L +++ L L FF
Sbjct: 908 SSQFCRNSSSLLSLSVSKVSAKKKIKESLSFSKKL*N*LRFF 1033
>TC9811 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (38%)
Length = 638
Score = 24.6 bits (52), Expect = 2.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 97 NNSGSSHHRKVDSSSCLW 114
NNS S+HH+ +S LW
Sbjct: 179 NNSASTHHQPPSKNSPLW 126
>AV407527
Length = 410
Score = 24.6 bits (52), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 82 KCGFYYRRRRFSQLLNNSGSS 102
K GF + +S+ LNNSGSS
Sbjct: 304 KLGFLHPLHGYSEKLNNSGSS 366
>BP033460
Length = 538
Score = 24.6 bits (52), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +2
Query: 23 QNYTMIEKRQLFLRSYQFCRKKSLTERIK 51
+NYT+ E +L+L +Q RKK E+ K
Sbjct: 26 KNYTLYEFSELYLYPHQ*GRKKEKCEKRK 112
>CB827389
Length = 497
Score = 24.6 bits (52), Expect = 2.4
Identities = 15/32 (46%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = -2
Query: 83 CGFYYRRRRFSQLLNNSGSSHHRKVD-SSSCL 113
C F + FS LL +S S HHR SS CL
Sbjct: 214 CTFNSKTLIFSHLLIHSPSIHHRHFSRSSPCL 119
>AV426985
Length = 422
Score = 24.6 bits (52), Expect = 2.4
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +2
Query: 73 RKLVFFPRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSSC 112
RKL FP+ KC F ++ ++ NS S+ +++S C
Sbjct: 2 RKLNIFPQQKCNFGGKKTCVIGVMKNSLSTTSVPINTS*C 121
>TC14597 similar to UP|RR1_SPIOL (P29344) 30S ribosomal protein S1,
chloroplast precursor (CS1), partial (59%)
Length = 866
Score = 24.3 bits (51), Expect = 3.1
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +1
Query: 42 RKKSLTERIKGSLVRAKKVVWLKLRYARGL 71
R K L R+K L++ K V WLK + RGL
Sbjct: 568 RLKMLLSRVK-LLMQTKVVWWLKWKALRGL 654
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 23.9 bits (50), Expect = 4.1
Identities = 14/49 (28%), Positives = 28/49 (56%)
Frame = +3
Query: 21 PDQNYTMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYAR 69
P ++ T ++R+ FLR Y K++ + ++ LVR + + L+ R +R
Sbjct: 63 PRRSKTESKRREDFLRVY*SVVKEAFEDIVRTCLVRRMRSLRLRRRGSR 209
>CN825728
Length = 711
Score = 23.9 bits (50), Expect = 4.1
Identities = 12/36 (33%), Positives = 17/36 (46%)
Frame = +2
Query: 79 PRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSSCLW 114
PR +C F + R + + S SH R SCL+
Sbjct: 182 PRKRCRFSFSGRCKTSTSHGSPHSHSRSCFQRSCLF 289
>AV416470
Length = 275
Score = 23.9 bits (50), Expect = 4.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 38 YQFCRKKSLTERIKGSLVRAKKVVWLK 64
Y+F +L E + G L + + W+K
Sbjct: 137 YEFMHNGTLKEHLYGPLTHGRSINWIK 217
>CB828712
Length = 532
Score = 23.5 bits (49), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 2/41 (4%)
Frame = +3
Query: 33 LFLRSY--QFCRKKSLTERIKGSLVRAKKVVWLKLRYARGL 71
LF SY FCR+ SL RI S + ++ W + RG+
Sbjct: 129 LFFWSY*AIFCRRSSLACRIISSRLWRRRWRWRRRLMMRGM 251
>AV408408
Length = 429
Score = 23.5 bits (49), Expect = 5.3
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +1
Query: 62 WLKLRYAR---GLRRKLVFFPRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSS 111
WL L + R +R+++ RR RFS G SHHR + S+
Sbjct: 187 WLMLIFCRLPPWVRKQVTLLKSTYSPIQKRRSRFSLREQRWGFSHHRWLQLSA 345
>AI967458
Length = 482
Score = 23.5 bits (49), Expect = 5.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 93 SQLLNNSGSSHHRKVDSSSCL 113
S L N+ GSSH +S +CL
Sbjct: 211 SHLWNHHGSSHGSSCESCNCL 149
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.329 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,320,373
Number of Sequences: 28460
Number of extensions: 30301
Number of successful extensions: 199
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of query: 114
length of database: 4,897,600
effective HSP length: 90
effective length of query: 24
effective length of database: 2,336,200
effective search space: 56068800
effective search space used: 56068800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)
Medicago: description of AC148406.1