TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148405.1 + phase: 0 
         (149 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP044444                                                               44  1e-05
BP079893                                                               26  2.5
AV413534                                                               25  7.3
BP066366                                                               25  7.3
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {...    25  7.3
TC9220 similar to UP|Q8W1N7 (Q8W1N7) CSLC7 (Fragment), partial (...    24  9.5
TC20248 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (8%)    24  9.5
TC10692 weakly similar to UP|BAD08916 (BAD08916) Calcium-binding...    24  9.5
BP062667                                                               24  9.5

>BP044444 
          Length = 482

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = -1

Query: 79  KISWPLVWGQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHV 122
           +ISW  VW + CL Y   KL+ + D L+++G+++  Q+ F+ +V
Sbjct: 419 QISWRGVWAKCCLSYNNHKLLNDDDALQNFGVRNNSQVHFVPYV 288


>BP079893 
          Length = 425

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 78  EKISWPLVWGQFCLC 92
           +++ W  +WG +C+C
Sbjct: 203 DRLKWLYIWGHYCIC 159


>AV413534 
          Length = 416

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 44  VLKLDSSSFQVEVAKTATVAV 64
           V KLD  +F  E+A+ ATVAV
Sbjct: 271 VSKLDLKAFSCELAEEATVAV 209


>BP066366 
          Length = 448

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 15  SLSIQLSSMIIVDCTLPYDKLPSQNLTL 42
           SL  Q SSM +V   +PY  +P   + L
Sbjct: 252 SLGEQFSSMALVSVAVPYSSVPQM*IAL 169


>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
            thaliana;}, partial (87%)
          Length = 1385

 Score = 24.6 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 118  FIRHVSNVCNFQRKPKKRT----VNLKQHGRYEFS 148
            F+ HVS +C    K +KRT    V++  H  + F+
Sbjct: 1107 FVFHVSFLCTLSCKDEKRTHLRVVSIYSHAGFHFA 1211


>TC9220 similar to UP|Q8W1N7 (Q8W1N7) CSLC7 (Fragment), partial (39%)
          Length = 885

 Score = 24.3 bits (51), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 106 RDYGIKDGDQLRFIRHVSNVCNFQRKPKKR 135
           +D  IK+G     +R++    NF+RK  +R
Sbjct: 75  KDQSIKEGSLCLILRNLKKKSNFRRKRHQR 164


>TC20248 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (8%)
          Length = 496

 Score = 24.3 bits (51), Expect = 9.5
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -1

Query: 12  PRRSLSIQLSSM------IIVDCTLPYDKLPSQNLTLTVLKLDSSSFQVEVAKTATVAVL 65
           PR S ++++ S       + + C LP  K+P Q+L+    +   S +       AT + L
Sbjct: 226 PRSSEALEVFSRKMECRTVALVCVLPITKMPEQSLSSLCTRRGGSEYSYFKHDAATTSKL 47

Query: 66  K 66
           +
Sbjct: 46  R 44


>TC10692 weakly similar to UP|BAD08916 (BAD08916) Calcium-binding EF-hand
           family protein-like, partial (32%)
          Length = 634

 Score = 24.3 bits (51), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +3

Query: 2   SELTSVSNESPRRSLSIQLSSMIIVDCTL 30
           S LTS S   PRRS S + +++ ++  T+
Sbjct: 192 SRLTSASTSQPRRSSSPRSTTLCLIRLTV 278


>BP062667 
          Length = 528

 Score = 24.3 bits (51), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (49%)
 Frame = +1

Query: 35  LPSQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAA 72
           +P QN    +LKL SSS    +   A   VL+   E+A
Sbjct: 121 IPCQNPKTNMLKLISSSHIHRLTPAAAAPVLRPIAESA 234


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,576,023
Number of Sequences: 28460
Number of extensions: 32308
Number of successful extensions: 193
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of query: 149
length of database: 4,897,600
effective HSP length: 82
effective length of query: 67
effective length of database: 2,563,880
effective search space: 171779960
effective search space used: 171779960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)