TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148404.5 - phase: 0 
         (192 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI417933                                                               31  0.12
TC10825 similar to GB|AAP68339.1|31711966|BT008900 At1g74740 {Ar...    30  0.21
BI420443                                                               30  0.35
TC15005 homologue to UP|Q9AR92 (Q9AR92) Protein kinase  , partia...    29  0.60
AU089222                                                               28  1.3
CN825207                                                               26  3.9
TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, parti...    26  3.9
TC10758                                                                26  3.9
TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla...    26  3.9
BP053132                                                               26  5.1
AV778773                                                               26  5.1
TC11056 similar to UP|O81390 (O81390) Calcium-dependent protein ...    25  6.6
BP061727                                                               25  6.6
TC11251 UP|R11E_LOTJA (Q40195) Ras-related protein Rab11E, complete    25  8.6
TC14668 UP|BAC98256 (BAC98256) MKIAA1813 protein (Fragment), par...    25  8.6
TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete     25  8.6
TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like...    25  8.6
BP051339                                                               25  8.6

>BI417933 
          Length = 568

 Score = 31.2 bits (69), Expect = 0.12
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +2

Query: 16  LPKTFSDNLNKKLPENVTLKGPSGVTWNIRLTTRDGFVYFVDGWQQFMNDHSLKANDFLV 75
           +PK F + +  ++   V L+ P G T+N+      G      G    ++ H ++    + 
Sbjct: 251 VPKRFHEPVGYEINNVVQLQDPVGNTFNLSYYFNQGDHRIGAGLFNILSVHEIQHTVMVH 430

Query: 76  CKYNGESHFEVLIFD 90
             Y G++ F + IFD
Sbjct: 431 FLYRGQARFNIHIFD 475


>TC10825 similar to GB|AAP68339.1|31711966|BT008900 At1g74740 {Arabidopsis
           thaliana;}, partial (32%)
          Length = 1091

 Score = 30.4 bits (67), Expect = 0.21
 Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 77  KYNGESHFEVLIFDGESFCEKEASYFVEKCGHAQTA----QGGSNASETNNSIEEVDTDS 132
           K   + HF         F +K+ S ++E  G  Q A     G ++A   N+ + EVDTD 
Sbjct: 214 KMENDEHFHKAF----KFFDKDGSGYIES-GELQEALADESGVTDADVLNDIMREVDTDK 378

Query: 133 NGGDSPEQF 141
           +G  S E+F
Sbjct: 379 DGRISYEEF 405


>BI420443 
          Length = 493

 Score = 29.6 bits (65), Expect = 0.35
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 16  LPKTFSDNLNKKLP-ENVTLKGPSGVTWNIRLTTRDGFVYFVDGWQQFMNDHSLKANDFL 74
           LP+ F D+ +  L  E   L  P G  ++  +T     V F + +Q+  + H+L+    +
Sbjct: 99  LPRQFIDSHSHVLENEMAVLFDPVGNVFHCLVTRCGTGVQFEEVFQRICHKHNLEGTSII 278

Query: 75  VCKYNGESHFEVLIF-DGE 92
              +  ++H+++ IF DGE
Sbjct: 279 HLCHIHDNHYDIRIFGDGE 335


>TC15005 homologue to UP|Q9AR92 (Q9AR92) Protein kinase  , partial (19%)
          Length = 657

 Score = 28.9 bits (63), Expect = 0.60
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +2

Query: 47  TTRDGFVYFVDGWQQFMNDHSLKANDFLVCKYNGESHFEVLIFDGESFCEK-EASYFVEK 105
           + RDG + +++     M+ H L+ +D L         F     D   F  + E    +++
Sbjct: 5   SARDGTIDYIEFVTATMHRHKLERDDHL------N*AFPYFDKDSSGFITRDELEIAMKE 166

Query: 106 CGHAQTAQGGSNASETNNSIEEVDTDSNGGDSPEQF 141
            G    A      SE +  I EVDTD +G  + E+F
Sbjct: 167 YGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEF 274


>AU089222 
          Length = 345

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (47%)
 Frame = +3

Query: 107 GHAQTAQGGSNASETNNSIEEVDTDSNGGDSPEQFTDDA 145
           G A    G   A E    ++E+D D +G  S E+FT  A
Sbjct: 141 GEALKTLGSVTAEEVQRMMDEIDIDGDGFISYEEFTSFA 257


>CN825207 
          Length = 678

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 17  PKTFSDNLNKKLPENVTLKGPSGVTWNIRLTTRDGFVYFVDGWQQ----FMNDHSLKAND 72
           PK      N   P+ V+LKG   V W   L   D F+++   +++     +N  S +  D
Sbjct: 156 PKCPQYYYNSFEPKTVSLKGQLAVNWPNMLAADDEFMFWAPEYEKHGTCMVNGGSFQQGD 335

Query: 73  F 73
           +
Sbjct: 336 Y 338


>TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (28%)
          Length = 695

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +2

Query: 108 HAQTAQGGSNASET----NNSIEEVDTDSNGGDSPEQFTDDAVPKTTAIQSPFIPTGKRT 163
           H+ T +  +++S+     +NS     T      SP Q T  A+P+ ++  SP +PTG   
Sbjct: 170 HSSTTKPNTSSSQLPPDPSNSNSHPSTLHPLSPSPPQPTT-ALPRPSS--SPRLPTGPSK 340

Query: 164 KRRRRSP 170
           K+  RSP
Sbjct: 341 KKTTRSP 361


>TC10758 
          Length = 532

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = -1

Query: 164 KRRRRSPKAAANWGA 178
           KRRRRSP   A+WG+
Sbjct: 124 KRRRRSPPFCASWGS 80


>TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (65%)
          Length = 1341

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 3/62 (4%)
 Frame = +1

Query: 106 CGHAQTAQGG--SNASETNNSIEEVDTDSNGGDSPEQFTDDA-VPKTTAIQSPFIPTGKR 162
           CG+      G  S+ SE++   EE+    NG   PE  T+DA V KT    +   P+ K+
Sbjct: 340 CGYKVLTDDGDASDFSESDEEEEELMEQENG--KPETKTEDAKVAKTAKPAAAAGPSAKQ 513

Query: 163 TK 164
            K
Sbjct: 514 VK 519


>BP053132 
          Length = 480

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 87  LIFDGESFCEKEASYFVEKCGHAQTAQ 113
           +IF G+S+C     YF E  GH    Q
Sbjct: 459 IIFQGKSYCLTTEMYFWEFLGHRSRQQ 379


>AV778773 
          Length = 468

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 141 FTDDAVPKTTAIQSPFIPTGKRTKRRRRSPKAAANWGARAHAWVTCNKQH 190
           FT   +P T   +SPF PT         +P  ++   A AH+  TC + H
Sbjct: 85  FTPILLPSTPP-RSPFRPTSV-------APSPSSTTAAAAHSLPTCTRSH 210


>TC11056 similar to UP|O81390 (O81390) Calcium-dependent protein kinase ,
           partial (22%)
          Length = 675

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 103 VEKCGHAQTAQGGSNASETNNSIEEVDTDSNGGDSPEQF 141
           +++   A T  G  + +     I EVDTD++G  + E+F
Sbjct: 228 IDELETAMTQHGMGDEASIKEIISEVDTDNDGRINYEEF 344


>BP061727 
          Length = 373

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +2

Query: 160 GKRTKRRRRSPKAAANWGARAH-----AWVTCN-KQHPG 192
           GK++K R  S  AA  WG++AH     AW   N  Q PG
Sbjct: 260 GKKSKNRAGS-SAAKPWGSQAHNSNPRAWGNTNMAQKPG 373


>TC11251 UP|R11E_LOTJA (Q40195) Ras-related protein Rab11E, complete
          Length = 950

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 90  DGESFCEKEASYFVE 104
           DG++F EKE+ YF+E
Sbjct: 479 DGKAFAEKESLYFME 523


>TC14668 UP|BAC98256 (BAC98256) MKIAA1813 protein (Fragment), partial (3%)
          Length = 597

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -1

Query: 160 GKRTKRRRRSPKAAANWGA 178
           G+R +RRRRS K    W A
Sbjct: 495 GRRRRRRRRSGKGTRKWRA 439


>TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete
          Length = 1302

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 90  DGESFCEKEASYFVE 104
           DG+SF E+E+ YF+E
Sbjct: 665 DGKSFAERESLYFME 709


>TC9037 similar to GB|AAG24276.1|10880493|AF195889 fasciclin-like
           arabinogalactan protein FLA8 {Arabidopsis thaliana;} ,
           partial (61%)
          Length = 989

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 16/68 (23%), Positives = 32/68 (46%)
 Frame = -2

Query: 110 QTAQGGSNASETNNSIEEVDTDSNGGDSPEQFTDDAVPKTTAIQSPFIPTGKRTKRRRRS 169
           ++ QG  +  E + S    DT    G +P + +  ++ ++T           R++RRRR 
Sbjct: 751 KSRQGSYSNGENHRSFHR-DTSRLAGSAPLRRSRRSISRSTVRSLTC-----RSRRRRRK 590

Query: 170 PKAAANWG 177
            + + +WG
Sbjct: 589 RRGSRSWG 566


>BP051339 
          Length = 484

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = -3

Query: 53  VYFVDGWQQFMNDHSLKANDFLVCKYNG 80
           V  V   +QF+ND   K NDF   K+ G
Sbjct: 185 VNHVSQLRQFLNDSLTKGNDFHKLKHEG 102


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,780,333
Number of Sequences: 28460
Number of extensions: 49996
Number of successful extensions: 297
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of query: 192
length of database: 4,897,600
effective HSP length: 85
effective length of query: 107
effective length of database: 2,478,500
effective search space: 265199500
effective search space used: 265199500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)