TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148404.10 + phase: 0 
         (400 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP049986                                                               28  2.7
BI417283                                                               28  2.7
TC13121 similar to UP|SYFB_ARATH (Q9SGE9) Probable phenylalanyl-...    27  4.6
BE122534                                                               27  4.6
BP083384                                                               27  6.0
BP055826                                                               27  7.9
BP037631                                                               27  7.9
TC14139                                                                27  7.9
AV407620                                                               27  7.9

>BP049986 
          Length = 608

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 6   SLRLHQLPFFIIFFLQLFTAFSNASSSSSST 36
           SLR+H +   + F +   T+ S++SS+SSS+
Sbjct: 387 SLRIHTIAALVFFIIAKLTSSSSSSSTSSSS 479


>BI417283 
          Length = 557

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 13/24 (54%), Positives = 18/24 (74%)
 Frame = +3

Query: 16 IIFFLQLFTAFSNASSSSSSTHSN 39
          ++ FL L  A S++SSSSSS+H N
Sbjct: 69 LLLFLLLLVAPSSSSSSSSSSHEN 140


>TC13121 similar to UP|SYFB_ARATH (Q9SGE9) Probable phenylalanyl-tRNA
           synthetase beta chain  (Phenylalanine--tRNA ligase beta
           chain) (PheRS) , partial (37%)
          Length = 721

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 214 PLIPIRIIGSASLIAYVARNPYVQIG 239
           P +P R   S S   +V R+PY+QIG
Sbjct: 276 PALP*RTCSSPSSFLWVPRDPYLQIG 353


>BE122534 
          Length = 358

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 16/29 (55%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
 Frame = -2

Query: 12  LPFFIIFFLQLFTAFSNASS-SSSSTHSN 39
           LPFF I  LQLF  F ++SS  S S H N
Sbjct: 351 LPFFEIASLQLFNIFMHSSSFQSCSIHFN 265


>BP083384 
          Length = 362

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 198 SNQKNEFWPFLQSMCVPLIPIRII 221
           S Q   FWPFL S+ + +IP+ II
Sbjct: 80  SLQLKGFWPFLLSL*IKIIPLIII 9


>BP055826 
          Length = 544

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
 Frame = +3

Query: 86  SSKNNFT-VKFSDEISSWNHNKFTTTPKPDLASLVDQ 121
           S  N FT +  +D I SWN  K+   P P  AS + Q
Sbjct: 45  SLHNYFTKI*LNDLIYSWNQYKYN*NPAPTSASAIQQ 155


>BP037631 
          Length = 529

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 8/51 (15%)
 Frame = -2

Query: 354 KPLSIKKVKPFIESDSVSWANLMSNLSYTKL--------RPVLLPPEALTL 396
           K + I  V+PF  +  ++W  L S LSY+          R  L+ PE +T+
Sbjct: 459 KSIQIVPVQPFATNS*INWTCLNSCLSYSNCSL*CSMVSRSTLVTPEHITV 307


>TC14139 
          Length = 482

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 10/38 (26%), Positives = 21/38 (54%)
 Frame = -1

Query: 3   TMISLRLHQLPFFIIFFLQLFTAFSNASSSSSSTHSNI 40
           +M+   +HQ PF + F   +F   + AS++  + ++ I
Sbjct: 146 SMVHYNIHQFPFIVSFTSSIFIKKNTASANKQTIYTPI 33


>AV407620 
          Length = 414

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = +3

Query: 9  LHQLPFFIIFFLQLFTAFSNASSSSSSTHSNITHI 43
          LH +   I     LFTAF  +SS  SS+H+ I  I
Sbjct: 15 LHGIHLLIFIISTLFTAFIISSSPPSSSHT*IQAI 119


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,243,620
Number of Sequences: 28460
Number of extensions: 102643
Number of successful extensions: 700
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of query: 400
length of database: 4,897,600
effective HSP length: 92
effective length of query: 308
effective length of database: 2,279,280
effective search space: 702018240
effective search space used: 702018240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)