TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148403.7 - phase: 0 
         (315 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9882 similar to PIR|G96755|G96755 developmental protein homolo...    28  2.6
AV778703                                                               27  3.4
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete          27  3.4
TC7838 homologue to UP|Q93XW1 (Q93XW1) 14-3-3 protein, complete        27  4.5
TC11676                                                                27  5.9

>TC9882 similar to PIR|G96755|G96755 developmental protein homolog DG1118
           [imported] -                Arabidopsis thaliana
           {Arabidopsis thaliana;}, partial (55%)
          Length = 694

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 76  SSETSLEVSEEDKDDIIELVIEDH----EHALPQSAMVVKKTGINFKTSETSLKVSKEDE 131
           +  TSL   E D +++++ V +D+       LPQ+A       +  K +E      K DE
Sbjct: 147 AGSTSLSTPEGDVNNLMQQVADDYGLEVSVGLPQAAA----HAVPVKEAE------KVDE 296

Query: 132 DHLNRSAMELKEAG 145
           D L+R   ELK  G
Sbjct: 297 DDLSRRLAELKARG 338


>AV778703 
          Length = 603

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 17/67 (25%), Positives = 33/67 (48%), Gaps = 6/67 (8%)
 Frame = -1

Query: 30  RSAMELKYTGINFKSSETISLEVSEEDEDHLNQSA------MKLKETRINFKSSETSLEV 83
           R ++ LK T +   SSE+     SE  + H+N  A       + K++R + K      ++
Sbjct: 504 RCSVSLKSTQLRAYSSESDGRNASENKQVHVNDGANLDKGQNQPKKSREDVKHCHAHAQL 325

Query: 84  SEEDKDD 90
            E+D+++
Sbjct: 324 GEQDQEE 304


>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
          Length = 1064

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 29/123 (23%), Positives = 45/123 (36%)
 Frame = +3

Query: 19  EVSEEDEDHLNRSAMELKYTGINFKSSETISLEVSEEDEDHLNQSAMKLKETRINFKSSE 78
           E+ E +  H +           + KSS         + EDH+   ++   ++ +  KS E
Sbjct: 336 ELEERERRHFSSKNKSYSDDRDHGKSSHLFLEGTKRDVEDHIVARSVDADDSDVEVKSDE 515

Query: 79  TSLEVSEEDKDDIIELVIEDHEHALPQSAMVVKKTGINFKTSETSLKVSKEDEDHLNRSA 138
                S++D DD      ED   AL      +KK     +  E   K   E E+ L    
Sbjct: 516 E----SDDDDDD------EDDTEALLAELEQIKKE----RAEEKLRKERLEQEEELKVKE 653

Query: 139 MEL 141
            EL
Sbjct: 654 AEL 662


>TC7838 homologue to UP|Q93XW1 (Q93XW1) 14-3-3 protein, complete
          Length = 1202

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 20/89 (22%), Positives = 43/89 (47%), Gaps = 2/89 (2%)
 Frame = -1

Query: 179 CMFLNLIAFELLHVDGTRKEVISFVCFIDT-IIDSAVDVAILIRSGIIIN-YLESDKAVA 236
           C F N I   +LHV G + EVI+      + I+   +   I   +G+I + + ++  +V 
Sbjct: 893 CGFFNFICTFILHVRGPKGEVITEKLHDQSAILV*LLSQCIQFSNGLIKSLFCKAASSVR 714

Query: 237 KLFNSLAKEIPMDREGELEEVTKSMISYC 265
           ++ N + K   +  + + + V++  +  C
Sbjct: 713 RVQNLIVKHREVQSKAQPDRVSRRQLRVC 627


>TC11676 
          Length = 679

 Score = 26.6 bits (57), Expect = 5.9
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 259 KSMISYCKKPWKSWRAS-LIQTYFRNPWAMVSLVAAFFLFALTII 302
           K+M++ CK   +SWR    +   FR    ++S +  FFLF+ T+I
Sbjct: 415 KNMVNLCKCIERSWRFG*YVWHLFRT--LIISWLCFFFLFSNTLI 543


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.132    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,208,024
Number of Sequences: 28460
Number of extensions: 46296
Number of successful extensions: 285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of query: 315
length of database: 4,897,600
effective HSP length: 90
effective length of query: 225
effective length of database: 2,336,200
effective search space: 525645000
effective search space used: 525645000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)