BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.6 - phase: 0
(1336 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 219 3e-57
BP075943 159 4e-39
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 122 5e-28
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 118 5e-27
AV424544 108 4e-24
BP066094 103 5e-24
BP054557 98 1e-20
BP063694 92 7e-19
BP084332 91 1e-18
AV410378 90 3e-18
AV409763 89 5e-18
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 89 6e-18
BP043850 75 9e-14
BP057233 72 6e-13
AV766088 70 3e-12
AV766665 69 5e-12
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 67 2e-11
BP081717 66 4e-11
AV411594 56 7e-10
BP033602 60 2e-09
>AV780009
Length = 529
Score = 219 bits (557), Expect = 3e-57
Identities = 106/165 (64%), Positives = 127/165 (76%), Gaps = 1/165 (0%)
Frame = -1
Query: 1148 ACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRA 1207
A RV++Y+KG P QGL F DS L+L ++D+DWAGCPD+RRS +GY FLG+SLISWR
Sbjct: 523 ATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWRT 344
Query: 1208 KKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPV-LFCDNQSAIHIAGNP 1266
KKQ TV+RSSSEAEYRAL+ CE+QWL YL + L++ LPV LFCDNQSA+HIA NP
Sbjct: 343 KKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNV-PLPVPLFCDNQSALHIAHNP 167
Query: 1267 VFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLP 1311
FHERTKH+E+DCH VR KLQ + LLPI + QLAD FTKP P
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKPCP 32
>BP075943
Length = 547
Score = 159 bits (401), Expect = 4e-39
Identities = 88/167 (52%), Positives = 109/167 (64%), Gaps = 1/167 (0%)
Frame = -3
Query: 1004 SDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGIS 1063
S FTALL+YVDDV+LAGN M EI +K+ L +F+IKDLG+ KYFLG+E+A S GI
Sbjct: 542 SSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 1064 ICQRKYCLDLLKDTGLLGAKP-VTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTT 1122
+ QRKY L L+ D+G G +P + S L + P DI SYRR+VG+LLYL TT
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 1123 RPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDS 1169
RPDI F V QLSQFL+APT H +KYL G+PG GL + S
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 122 bits (305), Expect = 5e-28
Identities = 54/95 (56%), Positives = 70/95 (72%)
Frame = +1
Query: 1233 QWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFK 1292
QWL YLL+DL+V + +++CDN SA HIA NPVFHERTKH+EIDCH VRE++Q+ +
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 1293 LLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDL 1327
LLPI S LAD +TK L P+NFH KL +I++
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINI 285
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 118 bits (296), Expect = 5e-27
Identities = 58/105 (55%), Positives = 72/105 (68%)
Frame = +1
Query: 1230 CELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQN 1289
CEL WL Y+L+DLRV +L+CD+QSA HIA N VFHERTKHL+IDCH VREKLQ
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1290 IFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDLYNAKLEG 1334
+F LLPI S Q AD TKPL F + KL ++++Y++ G
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIYSSACGG 315
>AV424544
Length = 276
Score = 108 bits (271), Expect = 4e-24
Identities = 53/90 (58%), Positives = 66/90 (72%)
Frame = +3
Query: 980 KLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF 1039
KL+ +L + GY QSA DHSLF D FT +LVYVDD+ILAGN + EI +K LD++F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1040 KIKDLGKLKYFLGIEVAHSKLGISICQRKY 1069
+IKDLG LKYFLG+EVA S G+ + QRKY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP066094
Length = 532
Score = 103 bits (257), Expect(2) = 5e-24
Identities = 56/149 (37%), Positives = 88/149 (58%), Gaps = 1/149 (0%)
Frame = +2
Query: 907 AKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPK-PNQVCKLLK 965
+K +R+LI+ + ++ LHQ++V +AFL+G +SE VY+ P G K + + KL K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 966 SLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSM 1025
SLYGLKQA R WYE+L+ FLL + D +LF + +YVDD+I +
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1026 TEIDRIKAVLDVEFKIKDLGKLKYFLGIE 1054
+ ++ EF+++ +G+LKYFLGI+
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 25.8 bits (55), Expect(2) = 5e-24
Identities = 10/18 (55%), Positives = 15/18 (82%)
Frame = +3
Query: 891 YTQVEGIDFFDTFSPVAK 908
Y+Q GID+ +TF+PVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>BP054557
Length = 538
Score = 97.8 bits (242), Expect = 1e-20
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 3/180 (1%)
Frame = -2
Query: 393 IVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAE 452
++D+GA+ H+C ++ F + + PV + +PNG IA + +V FS VLYV
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 358
Query: 453 FKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFN 512
F NL+SV L NC + ++ C +Q++ LK G E GLY + +
Sbjct: 357 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAV---IDPAVKAK 187
Query: 513 HQPVIA-LSQSSSSTTFLPQEA-LWHFRLGHLSNDRLLRMQQHFPCIKVDS-NSVCDICH 569
H P + S F + LWH RLGH S+ +L +Q++FP I S CD CH
Sbjct: 186 HPPAEGNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKQITSPCDTCH 7
>BP063694
Length = 511
Score = 91.7 bits (226), Expect = 7e-19
Identities = 63/183 (34%), Positives = 94/183 (50%), Gaps = 6/183 (3%)
Frame = -2
Query: 473 FDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQE 532
F +D IQ++ + G +GLY LN SQ AL +SS LP+
Sbjct: 507 FLDDSFVIQNRKTGAVLGRXRCDQGLYVLNQDSQ-----------ALLTTSSP---LPRA 370
Query: 533 A--LWHFRLGHLSNDRLLRMQQHFPCIKVDS----NSVCDICHYSRHKKLPFKLSMNKAS 586
+ LWH RLGH++ D + ++ +H C+ V S C C ++ K+L F + +AS
Sbjct: 369 SFELWHSRLGHVNFDIIKQLHKH-GCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRAS 193
Query: 587 HCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIEN 646
+LIH D+ GP SI G YF+ +DD+SRFTW K KS+ S + F + +EN
Sbjct: 192 AVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMEN 13
Query: 647 QFN 649
+F+
Sbjct: 12 RFS 4
>BP084332
Length = 368
Score = 90.9 bits (224), Expect = 1e-18
Identities = 41/113 (36%), Positives = 71/113 (62%)
Frame = +2
Query: 1210 QHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFH 1269
Q T+A S++EAEY + + S ++ W+ + L+D ++ + +P+ +CDN +AI ++ NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPI-YCDNTAAISLSKNPILH 208
Query: 1270 ERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKL 1322
R KH+E+ HF+R+ +Q+ + L + + Q AD FTKPL F+ L L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>AV410378
Length = 358
Score = 89.7 bits (221), Expect = 3e-18
Identities = 44/116 (37%), Positives = 70/116 (59%), Gaps = 4/116 (3%)
Frame = +1
Query: 748 PTQIEHEPQQLNTRK-STRVSQKPNHLSDYVCNSSSDSTKQ---ASSGILYPIKHYHSLN 803
P++ P++ N ++ S RV + P++L DY C ++ +T +S+GI YP+ S +
Sbjct: 7 PSETLSNPEEGNVQRISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSKVISYH 186
Query: 804 NISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPN 859
++ S++ F + IT SEP Y EA + +CW KAM+ E+ AL N TWI VD PP+
Sbjct: 187 KLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPD 354
>AV409763
Length = 426
Score = 89.0 bits (219), Expect = 5e-18
Identities = 42/82 (51%), Positives = 53/82 (64%)
Frame = +2
Query: 28 NVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFK 87
N +Y+H SD P ++ VL+ NY SW+R+MR AL AKNK FVD SI VP + DP F
Sbjct: 176 NPFYLHPSDNPGISLVSQVLTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFH 355
Query: 88 AWNRCNMLVHSWIMNSVEDSIA 109
W R N +V SWI+NSV +A
Sbjct: 356 PWQRNNNIVASWILNSVSKDLA 421
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 88.6 bits (218), Expect = 6e-18
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = +3
Query: 1230 CELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQN 1289
CE WL Y L DLR+ L V++CDN+SA+H+A N VFH+RT+++EIDCH V K+
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 1290 IFKLLPIKSQSQLADFFTKPL 1310
I LL + S Q+AD FTK +
Sbjct: 198 ILHLLHVPSSDQVADVFTKTI 260
>BP043850
Length = 515
Score = 74.7 bits (182), Expect = 9e-14
Identities = 37/96 (38%), Positives = 56/96 (57%)
Frame = -1
Query: 1231 ELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNI 1290
E+ WL LL +L ++ L DN SAI IA NPV+HE T+H+E+DCH VRE + +
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1291 FKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMID 1326
L + + Q+AD TK L + + + KL +++
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVE 225
>BP057233
Length = 473
Score = 72.0 bits (175), Expect = 6e-13
Identities = 33/76 (43%), Positives = 48/76 (62%)
Frame = -2
Query: 1250 PVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKP 1309
P+L+CDN SA +A NPV H R+KH+EID H++R+++ QN + + + Q+AD TKP
Sbjct: 451 PILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKP 272
Query: 1310 LPPKNFHSFLPKLNMI 1325
L F KL +I
Sbjct: 271 LSHTRFSQLRDKLGVI 224
>AV766088
Length = 501
Score = 69.7 bits (169), Expect = 3e-12
Identities = 40/135 (29%), Positives = 69/135 (50%), Gaps = 13/135 (9%)
Frame = -3
Query: 512 NHQPVIALSQSSSSTTFLP----------QEALWHFRLGHLSND--RLLRMQQHFPCIKV 559
+HQ I L + +S P ++LWH RLGH S+ R LR + +
Sbjct: 403 HHQTGIPLMRCNSPGDLYPVTLSFPFAGIAQSLWHSRLGHPSSSALRYLRSNKFISYELL 224
Query: 560 DSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIW-GPISTHSIHGHKYFITALDDY 618
+ + VC+ C + +H +LPF S N ++++H D+W P+ + + GH++++ LDD+
Sbjct: 223 NYSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSA--GHRFYVLFLDDF 50
Query: 619 SRFTWIMLCKTKSEV 633
+ F W KS+V
Sbjct: 49 TDFLWTFPLSNKSQV 5
>AV766665
Length = 601
Score = 68.9 bits (167), Expect = 5e-12
Identities = 34/75 (45%), Positives = 49/75 (65%)
Frame = +3
Query: 1150 RVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKK 1209
R+ YLK +G LF+++ + + GFT AD+ G R ST GY FL +L++WR+K+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 1210 QHTVARSSSEAEYRA 1224
Q+ +ARSS EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 67.0 bits (162), Expect = 2e-11
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Frame = +2
Query: 984 FLLLQGYKQSASDHSLFILH-SDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIK 1042
F++ GY + +SDH + D F LL+YVDD+++ G + + +KA L EF +K
Sbjct: 11 FIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMK 190
Query: 1043 DLGKLKYFLGIEVAHSKLG--ISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNS 1100
DLG LG+++ + I + Q+ Y +L+ + P++TPL + KL
Sbjct: 191 DLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSMI 370
Query: 1101 PPHD------DILSYRRLVGKLLY 1118
P + + Y VG L+Y
Sbjct: 371 PSSEAERMEMSRVPYASAVGSLMY 442
>BP081717
Length = 291
Score = 65.9 bits (159), Expect = 4e-11
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = -1
Query: 530 PQEALWHFRLGHLSNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCY 589
PQ +WHFRLGH S+ L + + FP +K+ SN +CD CH ++ KLPF +S K+ C+
Sbjct: 180 PQFDMWHFRLGHPSSKVLQHISKVFPYVKLHSNIICDFCHMAKQTKLPFPISDTKSKACF 1
>AV411594
Length = 244
Score = 56.2 bits (134), Expect(2) = 7e-10
Identities = 30/65 (46%), Positives = 38/65 (58%)
Frame = +2
Query: 1050 FLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSY 1109
FL +A SK GI + +RKY L LL DT +G KP PLDPSIKL+ + D+ Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 1110 RRLVG 1114
R +G
Sbjct: 230 IRFIG 244
Score = 25.4 bits (54), Expect(2) = 7e-10
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = +3
Query: 1039 FKIKDLGKLKYFLGIE 1054
FK+K L +KYFLG+E
Sbjct: 18 FKLKVLDDMKYFLGLE 65
>BP033602
Length = 533
Score = 60.1 bits (144), Expect = 2e-09
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +3
Query: 487 KMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDR 546
KM G ++ +GLY+ F ++ L S T+ Q LWH RLGH +
Sbjct: 156 KMIGSAKMKDGLYYFE------DTFRNKAAQGLC-GMSCTSVRDQIMLWHNRLGHPNFQY 314
Query: 547 LLRMQQHFPCI--KVDSNSV-CDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTH 603
L + FP + V+ +S+ C+ C +++++ P+ AS + LIH D+WGP
Sbjct: 315 LRHL---FPDLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKIT 485
Query: 604 SIHGHKYFITALDDYS 619
+ G ++F+T +DD++
Sbjct: 486 TQFGKRWFVTFIDDHT 533
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,286,332
Number of Sequences: 28460
Number of extensions: 416234
Number of successful extensions: 2367
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 2319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2354
length of query: 1336
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1235
effective length of database: 2,023,140
effective search space: 2498577900
effective search space used: 2498577900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC148395.6