BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.5 - phase: 0
(130 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP065719 32 0.046
TC9479 similar to AAQ56832 (AAQ56832) At2g34040, partial (12%) 31 0.078
BP041382 28 0.39
TC15681 similar to UP|AAQ14515 (AAQ14515) NADH dehydrogenase sub... 28 0.39
BP064595 27 0.86
TC16796 similar to UP|Q7XYX7 (Q7XYX7) AKIN beta2, partial (55%) 27 1.1
TC16975 UP|O82458 (O82458) Rac GTPase activating protein 1, part... 27 1.1
TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13... 27 1.5
CB829546 25 4.3
CB828471 25 5.6
TC12904 similar to UP|INVA_PHAVU (O24509) Acid beta-fructofurano... 24 7.3
TC15591 24 7.3
TC15711 weakly similar to UP|MID2_YEAST (P36027) Mating process ... 24 9.5
>BP065719
Length = 567
Score = 31.6 bits (70), Expect = 0.046
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = +3
Query: 58 HISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQLRQAF 114
HI+ + +G L N E +++ FP L A WF +L S+ W QL + F
Sbjct: 231 HIARYQIEAGDLAIN----ENLKMKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIF 389
>TC9479 similar to AAQ56832 (AAQ56832) At2g34040, partial (12%)
Length = 707
Score = 30.8 bits (68), Expect = 0.078
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -2
Query: 63 LRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLPNGSITPWDQL 110
L SGT+ N + T+ LFPFL RD PN + PW L
Sbjct: 460 LLYSGTVS*NLIRTATVTETLFPFLFRDH--------PNLGLCPWQNL 341
>BP041382
Length = 493
Score = 28.5 bits (62), Expect = 0.39
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 74 VTPETIRLHLFPFLLRDRASAWFHSLPNGSITPW 107
+T ++ +L LF F+ A AW H LP +PW
Sbjct: 87 LTKQSPKLRLFFFMYSKLAWAWTHRLPGLVNSPW 188
>TC15681 similar to UP|AAQ14515 (AAQ14515) NADH dehydrogenase subunit 2,
partial (7%)
Length = 586
Score = 28.5 bits (62), Expect = 0.39
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 74 VTPETIRLHLFPFLLRDRASAWFHSLPNGSITPW 107
+T ++ +L LF F+ A AW H LP +PW
Sbjct: 529 LTKQSPKLRLFFFMYSKLAWAWTHRLPGLVNSPW 428
>BP064595
Length = 474
Score = 27.3 bits (59), Expect = 0.86
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 23 VYPTIDANNFDIKPALLNIVQQNQFFELPTEDP--NLHISTFLRLSGTLKSN---GVTPE 77
V P + +++ P N + + F L + P LH+ L S L S+ + P
Sbjct: 229 VSPLLLSDSNATGPLFFNPIPHSLTFLLSSTSPLPPLHLPPHLLPSRFLASSDPSSILPS 408
Query: 78 TIRLHLFPFLLR 89
+ LHLFP LLR
Sbjct: 409 SCFLHLFPLLLR 444
>TC16796 similar to UP|Q7XYX7 (Q7XYX7) AKIN beta2, partial (55%)
Length = 746
Score = 26.9 bits (58), Expect = 1.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 84 FPFLLRDRASAWFHSLPNGSITPWDQLRQAFLARSS 119
FP+LL++ + A F + PW L+ ++ SS
Sbjct: 332 FPYLLKEHSEASFAGMEEPMAAPWHNLQSQVVSWSS 225
>TC16975 UP|O82458 (O82458) Rac GTPase activating protein 1, partial (88%)
Length = 1686
Score = 26.9 bits (58), Expect = 1.1
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = +1
Query: 71 SNGVTPETIRLHLFPFLLRDRASAWFHSLPNGSITP 106
+ GV P + +H L++ AWF LP G + P
Sbjct: 409 NRGVVPNGVDVHCLAGLIK----AWFRELPTGILDP 504
>TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13.21
protein), partial (26%)
Length = 744
Score = 26.6 bits (57), Expect = 1.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 83 LFPFLLRDRASAWFHSLPNGSITPWDQLRQAFL 115
LF L + ASAW SL NGS+ + +L Q L
Sbjct: 627 LFVVKLSE*ASAWAFSLGNGSVNSFWKLLQFLL 725
>CB829546
Length = 550
Score = 25.0 bits (53), Expect = 4.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 47 FFELPTEDPNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLP 100
FF +P P TFL S N T + I + F L+ RA WF +P
Sbjct: 127 FFSVPRGKP----WTFLGASSPFFFNSKTHQGISVSSFLLLVLLRAFTWFCRVP 276
>CB828471
Length = 525
Score = 24.6 bits (52), Expect = 5.6
Identities = 11/34 (32%), Positives = 14/34 (40%)
Frame = -3
Query: 74 VTPETIRLHLFPFLLRDRASAWFHSLPNGSITPW 107
+ E + LHL L W H PN S+ W
Sbjct: 340 IAEEIVALHLLGVLFWHLCWIWRHPNPNWSVFVW 239
>TC12904 similar to UP|INVA_PHAVU (O24509) Acid beta-fructofuranosidase
precursor (Acid sucrose-6-phosphate hydrolase) (Acid
invertase) (AI) (Vacuolar invertase) , partial (41%)
Length = 813
Score = 24.3 bits (51), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +3
Query: 22 IVYPTIDANNFDIKPALLNIVQQNQFFE 49
+VY T+D +++K LLN V +E
Sbjct: 183 LVYDTVDFKTYELKKDLLNAVPGTGMWE 266
>TC15591
Length = 618
Score = 24.3 bits (51), Expect = 7.3
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +2
Query: 59 ISTFLRLS-GTLKSNGVTPETIRLHLFPFLLRDRASAWFHSLP 100
+STF R S + S+G T +R L F R + + W+H P
Sbjct: 44 VSTFFRSSTSSHSSHGSTRRHLRHRLSAFCRRQQ-NPWYHETP 169
>TC15711 weakly similar to UP|MID2_YEAST (P36027) Mating process protein
MID2 (Serine-rich protein SMS1) (Protein kinase A
interference protein), partial (6%)
Length = 1014
Score = 23.9 bits (50), Expect = 9.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 55 PNLHISTFLRLSGTLKSNGVTPETIRLHLFPFLLRDRASAWFHSL 99
P S+F S + S+G P + LHL + WFH L
Sbjct: 281 PPSQSSSFAICSTSATSSGSIPSSSLLHLLSLIWVRVCLDWFHLL 147
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,236,448
Number of Sequences: 28460
Number of extensions: 28320
Number of successful extensions: 129
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of query: 130
length of database: 4,897,600
effective HSP length: 80
effective length of query: 50
effective length of database: 2,620,800
effective search space: 131040000
effective search space used: 131040000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Medicago: description of AC148395.5